genome.fa.s2361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002361.1 Hibiscus syriacus cultivar Beakdansim tig00004820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139981

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7039--7102	31	2.0	33	81	6	78	53	3	7	35	1.46
7186--7244	25	2.3	25	82	8	66	38	5	5	50	1.46
7196--7247	25	2.1	25	89	7	79	46	3	1	48	1.31
23408--23473	27	2.4	27	100	0	132	40	25	13	19	1.89
31406--31532	52	2.5	50	75	6	128	41	7	9	41	1.64
34892--34917	12	2.2	12	100	0	52	15	23	42	19	1.89
41559--41657	40	2.6	37	85	7	121	32	11	7	49	1.65
43989--44044	5	11.2	5	81	7	51	53	0	1	44	1.11
43962--44066	20	5.2	21	72	16	62	51	0	0	46	1.13
43978--44076	43	2.3	44	81	16	120	50	0	1	48	1.07
48397--48426	2	15.0	2	100	0	60	50	0	50	0	1.00
50608--50645	20	1.9	20	88	0	58	21	26	10	42	1.85
50379--50712	175	1.9	175	98	0	641	38	21	8	32	1.83
51548--51591	18	2.4	18	88	0	61	27	25	6	40	1.80
52239--52319	33	2.4	34	79	12	85	45	2	2	49	1.28
52852--52898	25	1.9	25	91	4	78	27	12	31	27	1.93
53903--53976	32	2.3	32	83	4	87	41	1	5	51	1.33
57760--57993	115	2.0	114	95	0	414	38	17	7	36	1.79
59279--59314	16	2.3	15	90	4	54	41	0	5	52	1.24
61723--61843	50	2.4	50	97	1	224	43	6	4	44	1.52
67662--67701	2	20.0	2	100	0	80	50	0	0	50	1.00
69493--69596	40	2.6	40	96	0	190	26	11	9	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71526--71575	2	25.0	2	100	0	100	50	0	0	50	1.00
84554--84589	5	7.2	5	100	0	72	19	80	0	0	0.71
85644--85673	8	3.8	8	95	0	51	40	3	10	46	1.54
89900--90059	41	3.9	41	96	0	284	22	21	25	30	1.99
89917--90027	20	5.4	20	67	19	77	21	22	23	32	1.98
90910--91022	21	5.4	21	68	16	83	32	24	22	20	1.98
90908--91154	42	6.2	42	87	10	365	31	25	21	21	1.98
90994--91058	32	2.0	32	96	0	121	36	21	24	16	1.94
91024--91095	20	3.5	20	70	17	67	31	22	25	20	1.98
90952--91154	73	2.6	76	87	8	277	32	24	22	21	1.98
91189--91225	19	1.9	19	88	0	56	21	18	24	35	1.96
100819--100859	20	2.0	21	90	9	66	53	0	0	46	1.00
104164--104202	17	2.2	18	86	4	53	35	2	2	58	1.25
111689--111769	39	2.1	38	93	2	135	29	18	16	35	1.92
119822--120089	117	2.2	118	82	8	319	42	6	16	33	1.75
120875--120938	27	2.4	27	86	0	83	56	0	1	42	1.09
120896--120984	27	3.4	26	81	17	89	53	0	2	43	1.13
120899--120984	25	3.3	25	77	18	86	53	0	2	44	1.13
120940--121003	25	2.6	25	82	7	69	50	0	6	43	1.27
122073--122101	2	14.5	2	100	0	58	48	0	0	51	1.00
122636--122682	20	2.3	20	81	3	58	34	6	38	21	1.79
122644--122686	20	2.2	20	91	0	68	37	4	32	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123778--123844	32	2.1	33	91	2	109	35	7	11	44	1.70
124814--124852	19	2.0	20	85	5	53	46	0	5	48	1.24
130009--130053	23	2.0	23	90	0	72	24	26	26	22	2.00
131849--131893	21	2.1	21	84	8	56	17	24	26	31	1.97

Tables:   1

The End!