genome.fa.s2362.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002362.1 Hibiscus syriacus cultivar Beakdansim tig00004821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121111

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454--770	158	2.0	157	85	4	424	39	17	14	28	1.89
3779--3846	2	35.5	2	88	8	106	45	0	0	54	0.99
5125--5183	10	5.7	10	78	7	64	16	13	10	59	1.61
5434--5499	25	2.7	26	75	15	68	9	9	19	62	1.52
15683--15754	2	36.5	2	97	2	137	50	0	0	50	1.00
16546--16726	65	2.8	64	82	9	190	26	18	25	29	1.98
16568--16726	65	2.5	65	87	7	218	26	18	24	30	1.98
19341--19416	21	3.5	22	75	12	75	28	23	22	25	1.99
25233--25391	65	2.5	65	85	8	202	27	17	24	30	1.97
36396--36447	15	3.2	17	72	22	58	36	21	0	42	1.53
43731--43790	3	18.0	3	90	10	66	0	33	0	66	0.92
43795--43859	26	2.8	22	76	17	69	35	0	7	56	1.28
44964--44993	2	15.5	2	93	6	53	50	0	0	50	1.00
47276--47320	16	2.8	17	80	12	51	60	4	0	35	1.17
47256--47339	44	1.9	44	83	13	111	60	4	0	34	1.18
51986--52086	50	2.0	50	100	0	202	25	33	13	26	1.94
52339--52439	44	2.3	44	81	3	105	31	10	27	29	1.91
56226--56264	20	2.0	20	85	10	53	51	2	12	33	1.54
57238--57283	19	2.5	20	86	10	62	47	0	0	52	1.00
57239--57283	18	2.4	19	85	7	65	48	0	0	51	1.00
68201--68247	16	2.7	18	74	16	53	63	2	10	23	1.37
69026--69052	13	2.1	13	100	0	54	22	7	7	62	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72180--72231	21	2.5	21	81	3	61	38	19	25	17	1.93
72220--72333	20	5.7	20	81	6	104	32	25	17	24	1.97
72217--72333	61	1.9	61	83	0	153	34	24	17	23	1.96
72851--72917	19	3.5	19	81	2	80	49	25	16	8	1.74
72913--73057	19	8.1	19	73	16	130	11	22	20	46	1.82
72913--73049	52	2.6	52	90	1	202	11	21	21	45	1.83
72968--73032	33	2.0	33	90	0	103	10	23	23	43	1.85
74504--74634	63	2.1	63	97	0	244	20	17	36	25	1.94
75201--75371	41	4.1	42	78	3	184	22	37	16	23	1.94
75267--75381	21	5.5	21	66	10	56	23	33	20	22	1.98
75198--75371	83	2.1	83	96	2	323	21	37	17	23	1.94
75341--75401	21	3.0	20	71	7	59	22	37	19	19	1.94
75198--75401	83	2.5	83	91	3	286	22	36	18	23	1.95
76737--76772	14	2.6	14	95	0	63	30	0	25	44	1.54
76896--76952	14	3.7	14	72	20	51	45	22	22	8	1.80
76878--76958	33	2.5	33	95	0	144	45	20	22	11	1.82
76878--76938	19	3.5	19	70	21	60	45	21	21	11	1.82
76963--77092	19	7.7	19	65	24	85	14	22	20	43	1.88
76968--77092	33	3.8	32	86	9	173	15	21	20	43	1.88
76960--77091	66	2.0	65	94	1	228	16	21	19	41	1.90
79300--79324	12	2.1	12	100	0	50	0	28	0	72	0.86
80294--80342	20	2.5	20	100	0	98	30	18	30	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80555--80624	20	3.5	20	96	1	124	32	25	24	17	1.96
80672--80714	19	2.3	19	100	0	86	16	20	16	46	1.84
80841--80874	14	2.4	14	90	0	50	47	20	0	32	1.51
82747--82793	20	2.3	20	81	0	58	38	23	21	17	1.93
82759--82822	19	3.3	19	84	2	74	40	17	23	18	1.91
82787--82868	19	4.6	19	78	17	104	45	20	20	13	1.85
82880--82937	14	3.9	14	77	16	62	10	15	24	50	1.75
82875--82953	32	2.4	33	93	2	133	11	17	22	48	1.79
82938--82981	20	2.2	20	84	4	54	20	25	18	36	1.95
83474--83518	18	2.5	18	85	0	63	15	15	42	26	1.87
85154--85197	22	2.0	22	90	0	70	20	15	43	20	1.88
85386--85437	20	2.6	20	90	0	77	26	21	26	25	1.99
85446--85492	20	2.3	20	96	0	85	27	19	23	29	1.98
85371--85489	61	2.0	61	86	3	168	25	16	23	34	1.95
85508--85548	21	2.0	21	85	0	55	34	31	17	17	1.93
86154--86179	2	13.0	2	100	0	52	50	0	0	50	1.00
93402--93470	36	1.9	36	85	8	97	50	2	0	46	1.16
93800--93847	19	2.5	19	100	0	96	25	37	14	22	1.92
95958--95995	14	2.7	14	95	0	67	60	0	0	39	0.97
96562--96638	35	2.2	35	92	0	127	46	7	2	42	1.46
96617--96657	20	2.0	20	90	0	64	43	4	2	48	1.37
99768--99829	30	2.0	31	84	3	81	38	14	11	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100929--100966	19	2.0	19	94	0	67	21	10	34	34	1.87
101739--101797	2	29.5	2	100	0	118	49	0	0	50	1.00
101963--101998	2	18.5	2	88	5	56	50	2	0	47	1.15
107039--107172	2	70.0	2	73	8	100	48	0	1	50	1.10
107095--107124	11	2.6	11	94	5	51	40	0	0	60	0.97
114222--114268	19	2.5	19	82	6	51	38	2	0	59	1.09
116391--116417	2	13.5	2	100	0	54	51	0	0	48	1.00
117035--117073	15	2.4	17	91	8	64	56	0	0	43	0.99
119855--119888	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!