Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002364.1 Hibiscus syriacus cultivar Beakdansim tig00004826_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69113

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5529--5601
36
2.0
37
89
2
112
19
28
30
21
1.98
6044--6082
20
2.0
20
85
10
53
20
30
30
17
1.96
6655--6690
15
2.4
15
90
0
54
13
16
33
36
1.89
7356--7403
21
2.2
21
82
10
62
20
37
20
20
1.95
12549--12714
85
2.0
85
83
4
210
31
16
19
32
1.94
12692--12737
13
3.5
13
84
0
65
34
21
17
26
1.95
12921--12992
32
2.2
32
87
4
101
41
2
11
44
1.54
15587--15619
3
11.0
3
87
12
50
63
0
0
36
0.95
24726--24779
22
2.3
24
75
18
60
44
1
7
46
1.42
34303--34359
20
2.8
20
97
0
105
54
5
15
24
1.62
34863--34898
17
2.0
19
89
10
58
27
22
11
38
1.88
37278--37325
24
2.0
24
83
0
60
10
14
27
47
1.76
37288--37336
24
2.0
24
96
0
89
10
12
24
53
1.69
37294--37349
24
2.3
24
87
0
76
14
8
19
57
1.63
37349--37389
14
2.9
14
85
0
55
31
17
0
51
1.46
38443--38485
16
2.7
16
92
0
68
9
9
20
60
1.55
44078--44395
158
2.0
158
85
3
435
39
17
14
27
1.89
46482--46530
15
3.3
15
85
0
71
12
20
61
6
1.52
47524--47566
2
22.0
2
95
4
79
48
0
0
51
1.00
48555--48593
21
1.9
21
89
5
62
66
12
7
12
1.43
48888--48938
24
2.1
24
92
0
84
17
13
7
60
1.56
48878--48931
14
3.9
14
92
4
83
18
12
7
61
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48873--48939
14
5.1
14
78
14
70
16
13
11
58
1.64
49196--49264
14
4.9
14
71
11
52
7
8
21
62
1.48
49191--49260
29
2.2
33
80
14
78
7
7
21
64
1.43
59516--59578
2
31.5
2
100
0
126
50
0
0
49
1.00
60376--60556
65
2.8
64
82
9
190
26
18
25
29
1.98
60398--60556
65
2.5
65
87
7
218
26
18
24
30
1.98
62717--62766
26
2.0
26
84
4
66
64
6
4
26
1.35
63167--63242
21
3.5
22
75
12
75
28
23
22
25
1.99

Tables:   1

The End!