genome.fa.s2365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002365.1 Hibiscus syriacus cultivar Beakdansim tig00004834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166549

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3577--3610	2	17.0	2	100	0	68	50	0	0	50	1.00
5106--5147	12	3.7	12	78	12	52	45	19	19	16	1.86
5187--5228	20	2.1	19	83	16	50	52	11	4	30	1.59
7157--7223	23	2.9	23	84	4	82	28	22	26	22	1.99
8312--8348	17	2.2	17	90	4	58	56	21	0	21	1.42
12213--12241	5	5.8	5	100	0	58	17	0	0	82	0.66
15050--15131	32	2.6	32	84	1	103	46	12	2	39	1.54
15046--15162	31	3.7	31	78	7	112	47	14	1	36	1.55
16009--16045	2	18.5	2	100	0	74	51	0	0	48	1.00
21699--21768	2	35.0	2	100	0	140	50	0	0	50	1.00
24469--24525	30	1.9	30	92	3	98	31	3	17	47	1.65
24606--24655	21	2.4	21	93	0	82	20	36	20	24	1.95
24662--24812	20	7.8	20	75	12	93	25	27	17	28	1.98
26394--26450	30	1.9	30	96	3	107	31	5	17	45	1.71
26531--26588	21	2.8	21	97	0	107	20	37	18	22	1.94
28126--28177	20	2.6	19	79	8	59	65	0	0	34	0.93
28030--28294	120	2.2	120	80	9	285	47	6	7	38	1.59
29662--29732	3	22.7	3	83	8	88	67	0	0	32	0.91
29662--29738	34	2.3	33	86	6	111	68	0	0	31	0.90
29670--29738	34	2.1	34	91	2	113	71	0	0	28	0.87
30000--30665	113	5.9	113	92	1	1027	28	19	14	36	1.92
31076--31124	22	2.2	22	96	0	89	38	14	10	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31494--31676	54	3.4	54	89	0	276	23	25	13	37	1.91
32757--32825	36	1.9	35	82	8	86	33	18	13	34	1.90
33746--33969	114	2.0	114	89	1	342	28	19	16	35	1.94
36032--36128	6	16.5	6	66	19	53	4	17	0	78	0.91
36023--36128	23	4.8	22	69	17	69	4	18	0	76	0.96
36032--36124	14	7.2	12	78	14	73	4	17	0	78	0.91
36064--36113	16	3.2	16	80	8	59	6	14	0	80	0.90
36023--36114	35	2.4	39	80	12	93	4	19	0	76	0.96
36052--36130	42	1.9	41	92	7	133	5	16	0	78	0.92
36053--36124	12	5.6	12	80	16	65	5	15	0	79	0.91
36067--36128	29	2.1	30	85	8	83	6	16	0	77	0.97
36032--36132	12	8.8	11	72	18	64	3	17	0	78	0.91
36171--36229	7	7.4	7	76	23	55	0	28	5	66	1.13
36171--36232	16	3.8	16	95	2	106	0	29	4	66	1.12
38922--39003	14	6.1	14	72	11	73	53	7	14	24	1.66
38934--38982	12	3.9	12	79	10	53	57	8	12	22	1.61
38922--39003	26	3.1	26	83	3	92	53	7	14	24	1.66
39042--39071	15	2.0	15	93	0	51	63	10	13	13	1.52
41192--41243	20	2.6	19	79	8	59	65	1	0	32	1.04
41096--41360	120	2.2	121	78	7	276	47	7	7	38	1.60
42730--42791	3	19.7	3	87	9	88	64	0	0	35	0.94
42730--42793	28	2.2	29	91	5	112	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44086--44133	5	9.4	5	86	4	51	31	0	0	68	0.90
44085--44133	26	1.9	26	83	4	64	32	0	0	67	0.91
54336--54382	23	2.1	23	92	4	78	76	4	14	4	1.09
54336--54391	23	2.5	22	85	5	76	75	5	14	5	1.16
70716--70757	20	2.1	20	95	0	75	35	4	26	33	1.77
80295--80339	3	15.0	3	95	0	81	64	0	0	35	0.94
82946--82987	23	1.9	21	85	9	57	66	0	0	33	0.92
84890--84957	30	2.3	30	86	0	91	35	10	36	17	1.84
88712--88765	26	2.1	26	89	0	81	35	25	12	25	1.92
90969--91090	59	2.1	58	84	7	158	29	14	3	52	1.58
91478--91604	59	2.1	60	82	4	150	31	18	15	34	1.92
97224--97264	16	2.6	16	96	0	73	34	0	19	46	1.50
97399--97459	22	2.9	22	92	4	99	29	24	21	24	1.99
97570--97624	25	2.2	26	80	9	69	21	9	14	54	1.68
101317--101405	32	2.8	31	75	11	83	24	30	26	17	1.98
101317--101439	63	2.0	63	83	6	160	26	29	27	17	1.97
102924--102958	18	1.9	18	88	0	52	28	17	0	54	1.43
104238--104274	7	5.1	7	93	6	65	27	27	32	13	1.94
104238--104274	15	2.6	14	95	4	65	27	27	32	13	1.94
104266--104326	13	4.3	13	75	18	50	19	18	44	18	1.87
104275--104309	18	1.9	18	88	0	52	20	20	42	17	1.89
104270--104344	31	2.4	31	86	0	105	20	16	45	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104303--104348	18	2.6	18	92	0	74	13	13	52	21	1.73
104293--104325	13	2.5	13	95	0	57	18	12	48	21	1.80
106329--106417	32	2.8	31	75	11	83	24	30	26	17	1.98
106329--106451	63	2.0	63	83	6	160	26	29	27	17	1.97
107937--107971	18	1.9	18	88	0	52	28	17	0	54	1.43
109249--109285	7	5.1	7	93	6	65	27	27	32	13	1.94
109249--109285	15	2.6	14	95	4	65	27	27	32	13	1.94
109277--109337	13	4.3	13	77	18	59	19	19	44	16	1.87
109286--109346	18	3.7	18	77	20	60	21	18	44	16	1.87
109281--109355	31	2.4	31	88	0	114	20	17	45	17	1.86
109314--109359	18	2.6	18	96	0	83	13	15	52	19	1.75
109304--109336	13	2.5	13	100	0	66	18	15	48	18	1.81
109364--109409	9	4.9	9	79	10	56	34	32	19	13	1.90
114345--114380	14	2.6	14	81	0	54	69	0	0	30	0.89
114813--114857	22	2.0	22	95	0	81	24	28	22	24	1.99
114854--114896	11	3.9	11	96	0	77	27	32	18	20	1.96
115396--115459	21	3.0	21	86	4	92	28	23	25	23	2.00
116891--116971	33	2.5	33	88	8	112	32	14	16	37	1.89
117024--117092	25	2.9	23	76	19	61	66	0	1	31	1.00
117438--117695	83	3.1	81	84	4	313	24	19	25	30	1.98
117763--118002	36	6.9	36	69	20	154	40	12	19	26	1.88
117889--118000	37	3.1	37	89	2	181	39	12	21	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122228--122275	15	3.2	15	93	0	87	31	33	20	14	1.93
122360--122433	29	2.6	29	97	2	141	18	21	16	43	1.88
122449--122483	12	2.9	12	100	0	70	40	25	0	34	1.56
122791--123015	64	3.5	65	81	6	217	28	19	19	32	1.96
128973--129051	29	2.8	29	92	1	124	20	20	16	43	1.89
129398--129622	64	3.5	64	81	4	213	27	20	20	32	1.97
131538--131628	35	2.7	32	79	18	103	69	1	1	28	1.03
132056--132123	15	4.5	15	71	21	52	67	0	1	30	0.99
133631--133674	20	2.2	20	87	0	61	54	13	18	13	1.71
133752--133933	6	30.5	6	99	0	357	32	50	16	0	1.45
134619--134664	5	8.6	5	92	2	56	0	17	54	28	1.43
134637--134668	6	5.5	6	96	3	57	0	15	53	31	1.43
134744--134787	20	2.2	20	91	0	70	11	18	15	54	1.70
134776--134906	20	6.4	20	85	4	154	19	24	18	38	1.93
134756--134906	60	2.5	62	80	9	168	18	23	17	40	1.91
151743--151859	35	3.3	35	89	2	180	36	19	22	21	1.95

Tables:   1

The End!