Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002366.1 Hibiscus syriacus cultivar Beakdansim tig00004835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99705

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3194--3354
80
2.0
81
93
1
279
16
19
27
37
1.92
10858--10937
35
2.4
35
83
10
96
11
16
1
71
1.21
10858--10938
33
2.5
32
82
13
94
11
17
1
70
1.22
12503--12552
26
2.0
25
88
11
75
68
4
14
14
1.36
14523--14566
13
3.4
13
84
9
63
68
0
2
29
1.02
15489--15526
20
1.9
20
100
0
76
34
10
39
15
1.82
16813--16861
19
2.6
19
93
0
80
22
2
4
71
1.13
17504--17554
21
2.4
21
76
0
57
23
31
25
19
1.98
17854--17886
15
2.2
15
100
0
66
39
0
27
33
1.57
25254--25280
3
9.0
3
100
0
54
33
0
0
66
0.92
30137--30171
17
2.1
17
89
5
54
48
0
0
51
1.00
30136--30179
16
2.8
16
83
10
54
47
0
0
52
1.00
30130--30196
25
2.7
25
82
13
68
47
1
0
50
1.10
44207--44232
2
13.0
2
100
0
52
50
0
0
50
1.00
59115--59222
34
3.2
32
77
11
90
36
0
2
61
1.11
59151--59218
33
2.2
32
84
7
86
39
0
1
58
1.07
59363--59416
17
3.2
17
72
0
54
31
0
3
64
1.11
60947--60994
21
2.3
21
85
0
60
25
39
12
22
1.89
61000--61070
21
3.4
21
88
7
108
18
32
28
21
1.96
61583--61679
34
2.9
34
88
0
140
56
3
3
37
1.31
62030--62777
128
5.8
128
95
0
1327
32
21
23
22
1.98
62858--62898
8
5.2
8
82
5
57
36
29
0
34
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67012--67065
24
2.3
23
83
3
63
25
3
1
68
1.16
82679--82795
35
3.3
35
89
2
180
21
22
19
36
1.95
99575--99678
41
2.6
41
87
3
149
35
19
25
19
1.95
99550--99683
61
2.2
62
84
2
180
38
19
24
17
1.93
99550--99678
20
6.3
20
84
3
141
37
18
24
18
1.93
99548--99701
61
2.5
61
78
9
163
41
18
22
17
1.90

Tables:   1

The End!