Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002368.1 Hibiscus syriacus cultivar Beakdansim tig00004840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77465
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Found at i:4740 original size:135 final size:130
Alignment explanation
Indices: 4367--4801 Score: 439
Period size: 135 Copynumber: 3.3 Consensus size: 130
4357 TCGAGAAACG
* * * * * ** *
4367 TGATTCATTCCACTGTTCTTCAAGGAAGATTGAATCGATGCAGACTTTTTCCACTGCTGTTCAGG
1 TGATTCATTCCA-TGTTCTTCAGGGAAAATTG-ATCGAGGCAGACTTGTTCCACTGTTCCTCACG
* *
4432 GAAGATCAAATCTAAAAAAGGAGGGATTTGTTATGTTGTTTCTTGAGAGAAAATCAGATATGAAA
64 GAAGATC-AATCTAAAAAA-GAGGGATTTGTTCTGTTGCTTCTTGAGAGAAAATCAGATATGAAA
*
4497 ACGT
127 ATGT
* * * *
4501 TGACTCATTCCATGTTCTTTAGGGAAAATTGATCGAGGCAGACTTGTTCCATTGTTCCT-ATGGA
1 TGATTCATTCCATGTTCTTCAGGGAAAATTGATCGAGGCAGACTTGTTCCACTGTTCCTCACGGA
* * * * * *
4565 AAATCAATCT--AAAAGAGGGATCTGTTCCGCTGCGTCTTGAGGGAAAATCAGATATGAAAATGT
66 AGATCAATCTAAAAAAGAGGGATTTGTTCTGTTGCTTCTTGAGAGAAAATCAGATATGAAAATGT
* * *
4628 TGATTCAATT-CACTTTTCTTCAGGTAAAATTGAATTG-GGTCAGACTTGTTCCACTGTTCCTCA
1 TGATTC-ATTCCA-TGTTCTTCAGGGAAAATTG-ATCGAGG-CAGACTTGTTCCACTGTTCCTCA
* *
4691 CGGAAGATCAGATCTGGAAAAAAGAGGGATTTGTTCTGTTGCTTCTTGAGCGAAAATCAGATCTG
62 CGGAAGATCA-ATCT--AAAAAAGAGGGATTTGTTCTGTTGCTTCTTGAGAGAAAATCAGATATG
*
4756 GAAATGT
124 AAAATGT
* ** *
4763 TGATTCGTTAAACTGTTCTTCAGGGAAGATTGAATCGAG
1 TGATTCATTCCA-TGTTCTTCAGGGAAAATTG-ATCGAG
4802 TTCAATTCGC
Statistics
Matches: 248, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
127 48 0.19
128 25 0.10
129 23 0.09
130 14 0.06
131 12 0.05
132 22 0.09
133 16 0.06
134 13 0.05
135 74 0.30
136 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (130 bp):
TGATTCATTCCATGTTCTTCAGGGAAAATTGATCGAGGCAGACTTGTTCCACTGTTCCTCACGGA
AGATCAATCTAAAAAAGAGGGATTTGTTCTGTTGCTTCTTGAGAGAAAATCAGATATGAAAATGT
Found at i:6050 original size:22 final size:22
Alignment explanation
Indices: 6025--6073 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
6015 ACTTGAACCC
6025 CTTTTATTTT-ATTTTTTTATTT
1 CTTTTATTTTCA-TTTTTTATTT
* *
6047 CTTTTTTTTTCATTTTTTCTTT
1 CTTTTATTTTCATTTTTTATTT
6069 CTTTT
1 CTTTT
6074 TTCTTTTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (22 bp):
CTTTTATTTTCATTTTTTATTT
Found at i:6065 original size:18 final size:18
Alignment explanation
Indices: 6044--6111 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 18
6034 TATTTTTTTA
6044 TTTCTTT-TTTTTTCATTT
1 TTTCTTTCTTTTTTC-TTT
6062 TTTCTTTCTTTTTTCTTT
1 TTTCTTTCTTTTTTCTTT
* *
6080 TCTCATTTCCATTTTTTTCATT
1 TTTC-TTT-C--TTTTTTCTTT
6102 TTTCTTTCTT
1 TTTCTTTCTT
6112 CAGGAGAAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
18 15 0.36
19 10 0.24
20 2 0.05
21 3 0.07
22 12 0.29
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTCTTTCTTTTTTCTTT
Found at i:6076 original size:11 final size:11
Alignment explanation
Indices: 6037--6079 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
6027 TTTATTTTAT
*
6037 TTTTTTATTTC
1 TTTTTTCTTTC
6048 TTTTTT-TTTC
1 TTTTTTCTTTC
6058 ATTTTTTCTTTC
1 -TTTTTTCTTTC
6070 TTTTTTCTTT
1 TTTTTTCTTT
6080 TCTCATTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.13
11 22 0.73
12 4 0.13
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:6081 original size:12 final size:11
Alignment explanation
Indices: 6026--6082 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 11
6016 CTTGAACCCC
* *
6026 TTTTATTTTAT
1 TTTTTTTTTCT
6037 TTTTTTATTTC-
1 TTTTTT-TTTCT
6048 TTTTTTTTTCAT
1 TTTTTTTTTC-T
*
6060 TTTTTCTTTCT
1 TTTTTTTTTCT
6071 TTTTTCTTTTCT
1 TTTTT-TTTTCT
6083 CATTTCCATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 4 0.11
11 17 0.45
12 17 0.45
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:14630 original size:2 final size:2
Alignment explanation
Indices: 14623--14648 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14613 GAATGATAGG
14623 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14649 GCTCATGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25861 original size:19 final size:17
Alignment explanation
Indices: 25827--25859 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25817 AGTTGGAATA
25827 ATGTTTTAGAATATATT
1 ATGTTTTAGAATATATT
*
25844 ATGTTTTAGTATATAT
1 ATGTTTTAGAATATAT
25860 ATCAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (17 bp):
ATGTTTTAGAATATATT
Found at i:26078 original size:94 final size:97
Alignment explanation
Indices: 25958--26147 Score: 287
Period size: 94 Copynumber: 2.0 Consensus size: 97
25948 TAGGTAAGAG
*
25958 ATAAATCATATTAAAATATACCGTCTCTTGCATGTGCCTTGTTATATGTTGCTCTTACATTGTTT
1 ATAAATCATATT-AAATATACCGTCTCTTCCATGTGCCTTGTTATATGTTGCTCTTACATTGTTT
26023 A-TTTTTCCGCTCTTAAATTCTTAAGATGCTCA
65 ATTTTTTCCGCTCTTAAATTCTTAAGATGCTCA
* * ** *
26055 ATAAATCATATT-AA-ATACTGTCTCTTCCGTGTTTCTTGTTATATGTTGCTCTTGCATTGTTTA
1 ATAAATCATATTAAATATACCGTCTCTTCCATGTGCCTTGTTATATGTTGCTCTTACATTGTTTA
*
26118 TTTTTTCCGCTCTTAAATTCTTGAGATGCT
66 TTTTTTCCGCTCTTAAATTCTTAAGATGCT
26148 TGATGATCAA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
94 43 0.51
95 30 0.35
97 12 0.14
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (97 bp):
ATAAATCATATTAAATATACCGTCTCTTCCATGTGCCTTGTTATATGTTGCTCTTACATTGTTTA
TTTTTTCCGCTCTTAAATTCTTAAGATGCTCA
Found at i:29730 original size:22 final size:22
Alignment explanation
Indices: 29704--29751 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
29694 AATACAATTA
*
29704 TAATATTACACACTTACCTCAC
1 TAATATTACACACTCACCTCAC
29726 TAATATTACACACTCACCTCAC
1 TAATATTACACACTCACCTCAC
29748 TAAT
1 TAAT
29752 GTTCTCTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (22 bp):
TAATATTACACACTCACCTCAC
Found at i:30295 original size:22 final size:22
Alignment explanation
Indices: 30269--30316 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
30259 AATACAATTA
*
30269 TAATATTACACACTTACCTCAC
1 TAATATTACACACTCACCTCAC
30291 TAATATTACACACTCACCTCAC
1 TAATATTACACACTCACCTCAC
30313 TAAT
1 TAAT
30317 GTTCTCTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (22 bp):
TAATATTACACACTCACCTCAC
Found at i:33390 original size:36 final size:36
Alignment explanation
Indices: 33348--33423 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
33338 TTATAGCTAA
*
33348 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
33384 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
33420 AAAA
1 AAAA
33424 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:37921 original size:15 final size:15
Alignment explanation
Indices: 37903--37932 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37893 CCACGGTGCT
37903 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
37918 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
37933 GATTGTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.47, G:0.27, T:0.13
Consensus pattern (15 bp):
CCCGGAATCCTGCGC
Found at i:38399 original size:36 final size:36
Alignment explanation
Indices: 38357--38432 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
38347 TTATAGCTAA
*
38357 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
38393 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
38429 AAAA
1 AAAA
38433 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:45509 original size:11 final size:12
Alignment explanation
Indices: 45488--45520 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
45478 TTCGATATTT
45488 ATAATAATTTAA
1 ATAATAATTTAA
45500 ATAA-AATTTAA
1 ATAATAATTTAA
*
45511 ATTATAATTT
1 ATAATAATTT
45521 TTTTTATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATAATAATTTAA
Found at i:47119 original size:3 final size:3
Alignment explanation
Indices: 47111--47185 Score: 75
Period size: 3 Copynumber: 25.0 Consensus size: 3
47101 ATTTGGGCCT
* *
47111 ATA ATA ATA TTTA TTA ATA ATA A-A ATA ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
47155 ATAA ATT ATA ATA ATA ATA AT- ATAA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA AT-A ATA ATA
47186 TTTAAATGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
2 6 0.10
3 50 0.81
4 6 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:47139 original size:21 final size:21
Alignment explanation
Indices: 47113--47189 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 21
47103 TTGGGCCTAT
47113 AATAATATTTATTAATAATAA
1 AATAATATTTATTAATAATAA
* *
47134 AATAATA-ATAATAATAATAA
1 AATAATATTTATTAATAATAA
*
47154 TATAA-ATTATAATAATAATAATATA
1 AATAATATT-T-AT--TAATAATA-A
47179 AATAATATTTA
1 AATAATATTTA
47190 AATGAAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
19 1 0.02
20 15 0.35
21 8 0.19
22 1 0.02
24 9 0.21
25 6 0.14
26 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATAATATTTATTAATAATAA
Found at i:47142 original size:24 final size:24
Alignment explanation
Indices: 47111--47185 Score: 95
Period size: 21 Copynumber: 3.2 Consensus size: 24
47101 ATTTGGGCCT
* *
47111 ATAATAATATTTATTAATAATA-AA
1 ATAATAATA-ATAATAATAATATAA
47135 ATAATAATAATAATAATAATATAA
1 ATAATAATAATAATAATAATATAA
47159 AT--T-ATAATAATAATAATATAA
1 ATAATAATAATAATAATAATATAA
47180 ATAATA
1 ATAATA
47186 TTTAAATGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
21 20 0.44
22 1 0.02
23 11 0.24
24 13 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATAATAATAATAATAATAATATAA
Found at i:47860 original size:113 final size:113
Alignment explanation
Indices: 47534--48845 Score: 1988
Period size: 113 Copynumber: 11.7 Consensus size: 113
47524 ATAGAATTAT
** * *
47534 GCAAAAGGTTGAACAAGCTATTCTCATTGTGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * * * *
47595 ATTATGAACTTTCTTTGAAAAAGCTGATCCGTTAAATGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
*
47643 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--T-TTATT-CTTCTTCAGATGACGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTT
* * * * *
47704 CTCATTATGAACTCTAC-CT-GACAATGTTGATCCATCAAATGATGAATTCAA
63 CTCATTATGAACT-TTCTCTGGA-AAAGCTGATCCATCAAGTGATGAATTTAA
* * *
47755 ACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTATTCCTTCTTCATATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
47820 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* * *
47868 GTAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
47933 ATTATTAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
*
47981 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
48046 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* *
48094 GTAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
48159 ATTATGAACTTTCTCTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* *
48207 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCGGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
48272 ATTATGAACTTTCTCTGGAAAATCTGATCCATCAAGTGATGAATTTAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
*
48320 GTAAAAGGTTGAACAAATTCTTCTCATTATGAA-TATCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACT-TCTTCTTCCTTCTTCAGATGAGTTCTTCT
*
48384 CATTATGAACTTTCTCTGGAAAAGCTCATCCATCAAGTGATGAATTTAA
65 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* *
48433 GAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
48498 ATTATGAACTTTCTCTGGAAAAACTGATCCATCAAGTGATGAATTTAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* *
48546 GTAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
48611 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
* * *
48659 GCAAAAGGCTGAACAAATTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTTTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
48724 ATTATGAACTTTCTCTGGAAAAGATGATCTATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
*
48772 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--T-TTATT-CTTCTTCAGATGACGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTT
48833 CTCATTATGAACT
63 CTCATTATGAACT
48846 CTACCTGGCA
Statistics
Matches: 1115, Mismatches: 71, Indels: 31
0.92 0.06 0.03
Matches are distributed among these distances:
109 55 0.05
110 5 0.00
111 2 0.00
112 99 0.09
113 935 0.84
114 4 0.00
115 5 0.00
116 10 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTAA
Found at i:49732 original size:114 final size:113
Alignment explanation
Indices: 49569--50020 Score: 688
Period size: 114 Copynumber: 4.0 Consensus size: 113
49559 GATCATGCAG
* * * * * * *
49569 TTCATCTTTTAATTCCAATGATTGGTTCTGTGGTTCTTATCGAACCAGATCAGATGACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCTG-GGTTCATACCAAACCAGATCAGATAACTCAAAGA
* * * * *
49634 AAACTTCCAGAAGATGCTATTGGATCTTCTTATTTCTACTGTGAGCAAA
65 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
* * * *
49683 TTTATCTTTCAAATCTAATGATTGATTTTAGGGTTCATACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCT-GGGTTCATACCAAACCAGATCAGATAACTCAAAGA
49748 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
65 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
*
49797 TTCATCTTTCAAATCCAATGATTGATTCTGGGGTTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCT-GGGTTCATACCAAACCAGATCAGATAACTCAAAGA
49862 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
65 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
*
49911 TTCATCTTTCAAATCCAATGATTGATTCTGCGGTTCATACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGATTCTG-GGTTCATACCAAACCAGATCAGATAACTCAAAGA
* *
49976 ACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAG
65 ACACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAG
50021 AACGTAACAC
Statistics
Matches: 314, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
113 1 0.00
114 312 0.99
115 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (113 bp):
TTCATCTTTCAAATCCAATGATTGATTCTGGGTTCATACCAAACCAGATCAGATAACTCAAAGAA
CACTTCCAGAAGATGCTATTGGGTCTTCGTATTTATACTATGAGCAAA
Found at i:60008 original size:20 final size:21
Alignment explanation
Indices: 59964--60013 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
59954 TAATACTTGA
*
59964 AAAATAAAATAAATCATTAAT
1 AAAATAATATAAATCATTAAT
59985 AAAATAATATAAAT-ATT-AT
1 AAAATAATATAAATCATTAAT
60004 GAAAATAATA
1 -AAAATAATA
60014 AATATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.07
20 12 0.44
21 13 0.48
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (21 bp):
AAAATAATATAAATCATTAAT
Found at i:60640 original size:11 final size:12
Alignment explanation
Indices: 60619--60651 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
60609 TTCGATATTT
60619 ATAATAATTTAA
1 ATAATAATTTAA
60631 ATAA-AATTTAA
1 ATAATAATTTAA
*
60642 ATTATAATTT
1 ATAATAATTT
60652 TTTTTATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATAATAATTTAA
Found at i:62252 original size:3 final size:3
Alignment explanation
Indices: 62246--62300 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
62236 TAATATTTAT
*
62246 TAA TAA TAA -AA TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
62292 TAAA TAA TA
1 T-AA TAA TA
62301 TTTAAATGAA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 4 0.09
3 41 0.87
4 2 0.04
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:66362 original size:18 final size:18
Alignment explanation
Indices: 66339--66381 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
66329 AGGTACATGT
66339 AATGATCTCAAGG-TCATC
1 AATGATCTC-AGGATCATC
*
66357 AATGATCTCAGGATCATT
1 AATGATCTCAGGATCATC
66375 AATGATC
1 AATGATC
66382 CTAAGTTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (18 bp):
AATGATCTCAGGATCATC
Found at i:68307 original size:14 final size:16
Alignment explanation
Indices: 68290--68322 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
68280 GGTATGCATC
68290 ACTATCTA-AC-CTTT
1 ACTATCTATACGCTTT
68304 ACTATCTATACGCTTT
1 ACTATCTATACGCTTT
68320 ACT
1 ACT
68323 CTTCGACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 2 0.12
16 7 0.41
ACGTcount: A:0.27, C:0.27, G:0.03, T:0.42
Consensus pattern (16 bp):
ACTATCTATACGCTTT
Found at i:70707 original size:8 final size:8
Alignment explanation
Indices: 70694--70762 Score: 50
Period size: 8 Copynumber: 8.5 Consensus size: 8
70684 TGTTATTTTA
70694 TTTTATTT
1 TTTTATTT
*
70702 TTTTATAT
1 TTTTATTT
70710 TTTTA-TT
1 TTTTATTT
* **
70717 TTTAACAT
1 TTTTATTT
70725 TTTTATTT
1 TTTTATTT
70733 TTTATATTT
1 TTT-TATTT
***
70742 TCCAACTTT
1 TTTTA-TTT
70751 TTTTATTT
1 TTTTATTT
70759 TTTT
1 TTTT
70763 TCTCTTTGGC
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
7 5 0.11
8 29 0.64
9 11 0.24
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTATTT
Found at i:70712 original size:15 final size:15
Alignment explanation
Indices: 70694--70742 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
70684 TGTTATTTTA
70694 TTTTATTTTTTTATAT
1 TTTTA-TTTTTTATAT
* *
70710 TTTTATTTTTAACAT
1 TTTTATTTTTTATAT
70725 TTTTATTTTTTATAT
1 TTTTATTTTTTATAT
70740 TTT
1 TTT
70743 CCAACTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTTATAT
Found at i:70893 original size:6 final size:6
Alignment explanation
Indices: 70882--70908 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
70872 AATCGAGTTT
70882 TTTAAA TTTAAA TTTAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTT
70909 TCGCTATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:74768 original size:95 final size:95
Alignment explanation
Indices: 74656--74908 Score: 316
Period size: 95 Copynumber: 2.7 Consensus size: 95
74646 AGATTATAAT
* *
74656 ATTATATATATAAAATAAAGCTTGAGTTGTTCCTTTAAAGCAATTGGTTAAACACCCCGGCTTTA
1 ATTATA-ATATAAAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTA
74721 TGGATAAGATTCAACTAGCCTGATAAAGGTG
65 TGGATAAGATTCAACTAGCCTGATAAAGGTG
* * *
74752 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCTGGCTTTAT
1 ATTATAATATAAAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTAT
* * *
74817 GGATAATATTCAGCTAGCCTGATAAAGTTG
66 GGATAAGATTCAACTAGCCTGATAAAGGTG
* * * * * ** *
74847 ATTA-GA-ATACAATGATA--TTAAGTTGTCCCTCTAGAGCAATTGGTTAAATGCCTCGGCTTTA
1 ATTATAATATAAAAT-AAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTA
74908 T
65 T
74909 AGATTCAGCT
Statistics
Matches: 141, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
92 40 0.28
93 7 0.05
94 3 0.02
95 85 0.60
96 6 0.04
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (95 bp):
ATTATAATATAAAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACACCCCGGCTTTAT
GGATAAGATTCAACTAGCCTGATAAAGGTG
Found at i:76206 original size:84 final size:84
Alignment explanation
Indices: 76041--77465 Score: 1334
Period size: 84 Copynumber: 17.0 Consensus size: 84
76031 GAAACTATTG
* * ** * *
76041 GCAACATAACTCAAGGCGAGAAGGGTTATCTTCC-ACCCAAGACCTTCGAGTTCGATTACACTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* *
76105 ACTCCAAGGCACATCATTT
66 GCTCCAAGGCACTTCATTT
* * * * **
76124 GCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACCAAAGACCTTCGAGTTCAACTATTCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
76189 GCTCCAAGGCACTTCATTT
66 GCTCCAAGGCACTTCATTT
* ** * * * * *
76208 GCAGCATAGTTCAAGG-ATAGAAGGGCTATCTTCCACCAAAAGACCTTCGAGTTTGACTACACTC
1 GCAACATAACTCAAGGCA-AGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTC
*
76272 AGCTCAAAGGCA-TATCATTT
65 AGCTCCAAGGCACT-TCATTT
* * * * * * *
76292 ACAGCATAAATCAAGGCTAA-AAGGGTTATCTACCAGCCAAAGACTTTCGAGTTCGACTACGCTC
1 GCAACATAACTCAAGGC-AAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTC
* *
76356 AGCTCCAACGCACATCATTT
65 AGCTCCAAGGCACTTCATTT
* * * * * *
76376 GCAACATAGCTAAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCTTCAACTTTGACTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
*
76441 GCTCAAAGGCA-TATCATTT
66 GCTCCAAGGCACT-TCATTT
** * * *
76460 GCAGGATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* ** * *
76525 ACTCCAACACACATAATTT
66 GCTCCAAGGCACTTCATTT
* * *
76544 GCAACATAACTCAAGGCAATAAGGGCTAT-TCGCC-ACTAAAAGACCTTCGAGTTCGACTA-GTA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCT-GCCAAC-AAAAGACCTTCGAGTTCGACTACG-C
*
76606 TCAGCTCCAAGGCA-TATCATTC
63 TCAGCTCCAAGGCACT-TCATTT
* * * * * * *
76628 GCAGCATAGCTCGAGGCTAGAAGGGTTATCTACCAACCAAAGACCTTCCAGTTCGACTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
*
76693 GTTCCAAGGCA-TATCATTT
66 GCTCCAAGGCACT-TCATTT
* * * * * * * *
76712 ACAACATAACACAAGGCAAGAGGGGCTATTTTCCAATAAAAGACCTTCGAGTTCGACTACGTTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* *
76777 GCTCAAAAGCA-TATCATTT
66 GCTCCAAGGCACT-TCATTT
* * ** * * *
76796 GCAACATAACTCAAGGCTAGAAGGATTATCTGCCAACCGAAGACCTTCGATTTTGACTACACTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* *
76861 GCTCCTAGGCACATCATTT
66 GCTCCAAGGCACTTCATTT
* * * * * *
76880 GCAACATAGCTCAAGGCAAGAAGAGCTATGTGCCAACAAAAGACCTTCGAGTTCGACTACGATTA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* * *
76945 GCTCCAAGGAACATCCTTT
66 GCTCCAAGGCACTTCATTT
* * * * *
76964 GCAACATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCAAGTTTGACTATGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
*
77029 GCTCCAAGGCACATCATTT
66 GCTCCAAGGCACTTCATTT
* ** * * *
77048 ACAGTATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAACACCTTCGAGTTCGACTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
*
77113 GCTCCAAGGCA-TATCATGT
66 GCTCCAAGGCACT-TCATTT
* * * * * * * *
77132 GCAACACAGCCCAAGACAATAAGGGCTATTTACCAACAAAAGA-CTTACGAGTTCGACTACGCTC
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTT-CGAGTTCGACTACGCTC
*
77196 AGCTCCAAGGCACATT-ATAT
65 AGCTCCAAGGCAC-TTCATTT
* * * * * * * * *
77216 GTAGCTTAACTCAAGGCTAGAATGGTTATCTGCCAGCAAAATACCTTCGAGTTTGATTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* *
77281 GGTCCAAGGCACATCATTT
66 GCTCCAAGGCACTTCATTT
* * * * * * * *
77300 GCAACATAGCTCAAGGAAATAAGGGCTATTTTCCAATAAAAGACCTTCGAGTTCAACTACGCTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
77365 GCTCCAAGGCACATT-ATTT
66 GCTCCAAGGCAC-TTCATTT
* * *** * * * *
77384 GCAGCATAACTTAAGTTGAGAAGGGTCATCTACCAACAAAAGACCTTTGAGTTCGACTACACTCA
1 GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
* *
77449 TCT-CAAGGGCACATCAT
66 GCTCCAA-GGCACTTCAT
Statistics
Matches: 1074, Mismatches: 242, Indels: 51
0.79 0.18 0.04
Matches are distributed among these distances:
83 46 0.04
84 1016 0.95
85 10 0.01
86 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (84 bp):
GCAACATAACTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTACGCTCA
GCTCCAAGGCACTTCATTT
Found at i:76560 original size:252 final size:252
Alignment explanation
Indices: 76041--77465 Score: 1536
Period size: 252 Copynumber: 5.7 Consensus size: 252
76031 GAAACTATTG
* * * * * *
76041 GCAACATAACTCAAGGCGAGAAGGGTTATCTTCC-ACCCAAGACCTTCGAGTTCGATTACACTCA
1 GCAACATAACTCAAGGCTAAAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * *
76105 ACTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTGCCAACCAAAGACCT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACCT
* ** ** * *
76170 TCGAGTTCAACTATTCTCAGCTCCAAGGCACT-TCATTTGCAGCATAGTTCAAGGATAGAAGGGC
131 TCGAGTTCGACTACGCTCAGCTCCAAGGCA-TATCATTTGCAGCATAACTCAAGGCTAGAAGGGT
* * * * *
76234 TATCTTCCACCAAAAGACCTTCGAGTTTGACTACACTCAGCTCAAAGGCATATCATTT
195 TATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * *
76292 ACAGCATAAATCAAGGCTAAAAGGGTTATCTACCAGCCAAAGACTTTCGAGTTCGACTACGCTCA
1 GCAACATAACTCAAGGCTAAAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * *
76357 GCTCCAACGCACATCATTTGCAACATAGCTAAAGGCAAGAAGGGTTATTTGCCAACAAAAGACCT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACCT
* * * * *
76422 TCAACTTTGACTACGCTCAGCTCAAAGGCATATCATTTGCAGGATAACTCAAGGCTAGAAGGGTT
131 TCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAGGGTT
* * * * ** *
76487 ATCTGCCAACCAAAGACCTTTGAGTTCGACTACGCTCAACTCCAACACACATAATTT
196 ATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
* *
76544 GCAACATAACTCAAGGC-AATAAGGGCTAT-TCGCC-ACTAAAAGACCTTCGAGTTCGACTA-GT
1 GCAACATAACTCAAGGCTAA-AAGGGTTATCT-GCCAAC-CAAAGACCTTCGAGTTCGACTACG-
* * * * * * * *
76605 ATCAGCTCCAAGGCATATCATTCGCAGCATAGCTCGAGGCTAGAAGGGTTATCTACCAACCAAAG
62 CTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAG
* * * * * * *
76670 ACCTTCCAGTTCGACTACGCTCAGTTCCAAGGCATATCATTTACAACATAACACAAGGCAAGAGG
127 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAG
* * * * * * * * *
76735 GGCTATTTTCCAATAAAAGACCTTCGAGTTCGACTACGTTCAGCTCAAAAGCATATCATTT
192 GGTTATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * *
76796 GCAACATAACTCAAGGCTAGAAGGATTATCTGCCAACCGAAGACCTTCGATTTTGACTACACTCA
1 GCAACATAACTCAAGGCTAAAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * * * *
76861 GCTCCTAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGAGCTATGTGCCAACAAAAGACCT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACCT
* * * * * *
76926 TCGAGTTCGACTACGATTAGCTCCAAGGAACATCCTTTGCAACATAACTCAAGGCTAGAAGGGTT
131 TCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAGGGTT
* * *
76991 ATCTGTCAACAAAAGACCTTCAAGTTTGACTATGCTCAGCTCCAAGGCACATCATTT
196 ATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
* ** * *
77048 ACAGTATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAACACCTTCGAGTTCGACTACGCTCA
1 GCAACATAACTCAAGGCTAAAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
* * * * * * *
77113 GCTCCAAGGCATATCATGTGCAACACAGCCCAAGACAATAAGGGCTATTTACCAACAAAAGA-CT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACCT
* * * * * *
77177 TACGAGTTCGACTACGCTCAGCTCCAAGGCACATTATATGTAGCTTAACTCAAGGCTAGAATGGT
131 T-CGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAGGGT
* * * *
77242 TATCTGCCAGCAAAATACCTTCGAGTTTGATTACGCTCAGGTCCAAGGCACATCATTT
195 TATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * * ** *
77300 GCAACATAGCTCAAGG-AAATAAGGGCTATTTTCCAATAAAAGACCTTCGAGTTCAACTACGCTC
1 GCAACATAACTCAAGGCTAA-AAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTC
* * * * *** * *
77364 AGCTCCAAGGCACATTATTTGCAGCATAACTTAAGTTGAGAAGGGTCATCTACCAACAAAAGACC
65 AGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACC
* * * *
77429 TTTGAGTTCGACTACACTCATCT-CAAGGGCACATCAT
130 TTCGAGTTCGACTACGCTCAGCTCCAA-GGCATATCAT
Statistics
Matches: 967, Mismatches: 193, Indels: 27
0.81 0.16 0.02
Matches are distributed among these distances:
251 41 0.04
252 919 0.95
253 7 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (252 bp):
GCAACATAACTCAAGGCTAAAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCA
GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTACCAACAAAAGACCT
TCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTCAAGGCTAGAAGGGTT
ATCTGCCAACAAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTT
Done.