Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002369.1 Hibiscus syriacus cultivar Beakdansim tig00004841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56557

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1754--1825
2
37.0
2
94
5
130
50
0
0
50
1.00
7454--7486
2
16.5
2
100
0
66
48
0
0
51
1.00
8373--8449
31
2.4
32
86
2
111
37
2
11
48
1.54
11253--11281
5
5.8
5
100
0
58
82
0
0
17
0.66
15146--15182
17
2.2
17
90
4
58
21
0
21
56
1.42
16268--16337
23
3.1
22
81
6
86
22
27
22
27
1.99
18260--18301
20
2.1
19
83
16
50
30
4
11
52
1.59
18341--18382
12
3.7
12
78
12
52
16
19
19
45
1.86
19880--19911
2
16.0
2
100
0
64
50
0
0
50
1.00
24027--24097
24
3.0
24
81
2
90
19
23
25
30
1.98
24709--24733
12
2.1
12
100
0
50
20
16
24
40
1.91
25235--25299
32
2.1
30
83
16
80
21
7
7
63
1.47
28888--28940
23
2.2
24
86
3
72
26
7
22
43
1.80
29056--29203
76
1.9
76
97
0
278
52
12
14
20
1.74
42633--42818
92
2.0
92
95
0
336
52
7
11
27
1.65
45347--45417
20
3.7
19
80
14
74
29
22
14
33
1.93
46145--46198
24
2.2
24
90
0
81
22
18
18
40
1.91
46361--46385
12
2.1
12
100
0
50
72
0
28
0
0.86
48441--48476
18
2.0
18
94
0
63
55
25
2
16
1.55
48747--48813
20
3.3
20
79
6
73
20
16
20
41
1.90
48876--49025
65
2.3
64
90
1
228
52
16
2
30
1.55
49003--49039
14
2.6
14
91
0
65
48
18
0
32
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50395--50470
21
3.6
21
81
0
80
21
17
38
23
1.93
50395--50480
42
2.0
42
84
4
111
22
17
37
23
1.94
50833--50953
63
1.9
63
80
12
142
28
37
13
21
1.91
52831--52875
16
2.8
16
82
3
54
73
4
0
22
1.01
52951--53006
22
2.5
22
94
0
94
19
16
41
23
1.90
53155--53237
20
4.2
20
92
0
130
22
15
22
38
1.92
54291--54665
92
4.1
92
89
3
562
36
13
17
32
1.89
54291--54663
179
2.1
181
88
3
554
36
13
17
32
1.89

Tables:   1

The End!