genome.fa.s237.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000237.1 Hibiscus syriacus cultivar Beakdansim tig00000411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120346

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822--901	24	3.5	24	69	20	73	23	25	21	30	1.99
3483--3624	65	2.2	64	83	8	173	31	23	18	26	1.97
10570--10603	5	6.8	5	100	0	68	41	0	58	0	0.98
11220--11266	23	2.0	23	91	0	76	34	12	31	21	1.91
12906--12940	13	2.8	13	95	4	63	31	17	37	14	1.89
12934--12967	11	3.1	11	95	0	59	38	23	17	20	1.93
12967--13046	22	3.4	22	73	18	79	33	18	38	8	1.82
12995--13160	28	5.6	28	78	13	188	33	19	35	10	1.87
12969--13194	61	4.1	51	76	21	213	34	19	35	10	1.86
12989--13179	61	3.1	61	96	0	346	34	20	34	10	1.87
13193--13301	29	3.8	29	95	2	184	14	31	32	22	1.94
13351--13424	37	2.0	37	97	2	141	16	45	13	24	1.83
13429--13463	18	1.9	18	100	0	70	28	17	25	28	1.97
13553--13597	22	2.0	23	95	4	83	48	4	37	8	1.55
13600--13658	21	2.9	21	92	2	93	61	0	37	1	1.07
13791--13930	41	3.3	42	73	15	119	41	0	11	46	1.45
13860--13950	45	2.0	44	85	10	119	42	0	12	45	1.41
16323--16365	14	3.2	13	80	9	50	48	4	4	41	1.44
16305--16355	17	3.2	17	75	16	63	43	9	5	41	1.62
16343--16649	26	12.4	25	74	16	198	45	9	1	42	1.48
16340--16417	11	6.5	12	73	15	54	50	5	1	43	1.32
16378--16626	98	2.5	98	96	1	464	44	10	2	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16459--16707	124	2.0	124	96	1	464	43	10	2	44	1.51
19301--19363	28	2.2	30	91	5	103	57	11	0	31	1.34
19305--19370	28	2.4	28	85	10	98	56	10	0	33	1.34
19340--19388	21	2.3	21	85	3	71	53	16	0	30	1.43
19879--19936	25	2.3	25	79	5	64	24	43	15	17	1.87
19994--20073	29	2.8	29	98	0	151	16	30	33	20	1.94
23788--24776	113	8.8	113	91	0	1561	45	15	18	21	1.85
29054--29193	36	3.9	36	80	5	167	37	19	22	20	1.94
29049--29193	71	2.0	72	85	1	193	39	18	22	19	1.93
30931--30958	14	2.0	14	100	0	56	42	7	14	35	1.73
34395--34998	168	3.6	166	83	5	635	33	10	11	44	1.75
42774--42837	2	32.0	2	100	0	128	50	0	0	50	1.00
50800--50865	23	3.0	23	77	16	59	68	0	6	25	1.13
50920--50987	29	2.3	30	77	5	77	72	7	0	20	1.09
51117--51175	19	3.2	18	79	11	57	64	0	3	32	1.10
51136--51238	22	4.7	21	72	18	77	62	1	4	31	1.27
51126--51308	67	2.7	67	77	10	160	59	3	5	31	1.36
51701--51805	37	2.8	37	88	0	156	29	15	15	40	1.88
52536--54016	106	14.0	106	89	1	2127	23	18	24	33	1.96
54839--54908	22	3.2	22	89	0	104	25	14	22	37	1.92
55521--55622	47	2.2	47	82	3	116	0	14	3	80	0.91
55534--55619	42	2.1	40	82	8	102	0	15	3	81	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55521--55619	27	3.5	28	78	9	85	1	14	4	80	0.90
55521--55622	9	10.9	9	70	19	75	0	14	3	80	0.91
60190--60257	29	2.3	30	77	5	77	72	7	0	20	1.09
60418--60455	19	2.0	19	85	10	51	63	0	2	34	1.09
60984--61088	37	2.8	37	85	0	147	29	14	15	40	1.86
62734--62856	10	12.8	9	71	13	84	17	26	27	27	1.98
62761--62860	19	5.3	19	91	7	159	16	27	30	27	1.96
62785--62862	9	8.3	9	81	8	93	15	28	30	25	1.96
62859--62911	5	9.8	5	76	15	52	20	50	20	7	1.72
62858--62918	17	3.3	17	77	20	68	19	47	21	11	1.81
62859--62911	22	2.4	22	96	0	97	20	50	20	7	1.72
62908--62938	7	4.4	7	91	0	53	19	29	25	25	1.99
63837--63872	18	2.0	18	100	0	72	5	22	22	50	1.70
70060--70151	19	4.7	19	77	11	89	17	26	27	29	1.97
70060--70134	29	2.6	29	77	10	89	17	24	26	32	1.97
70060--70151	39	2.4	39	77	14	100	17	26	27	29	1.97
70156--70198	22	2.0	22	85	0	59	20	44	20	13	1.86
72888--72934	25	1.9	25	95	4	87	44	12	12	29	1.80
80313--80801	43	11.3	43	88	1	692	18	23	22	35	1.96
80313--80803	173	2.8	172	89	1	750	18	23	22	35	1.96
80313--80840	130	4.1	129	87	1	716	19	22	22	35	1.96
91190--91234	23	2.0	23	90	0	72	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92690--92765	36	2.1	36	85	7	100	47	1	3	47	1.29
96941--97001	18	3.6	18	66	28	51	21	16	1	60	1.44
97091--97186	49	2.0	49	95	0	174	35	9	14	40	1.78
98133--98241	51	2.2	51	85	5	141	29	31	24	14	1.95
98696--98870	98	1.8	95	82	6	226	34	9	0	54	1.37
98781--99018	30	7.8	30	74	14	168	35	9	0	55	1.36
100856--100926	21	3.3	21	72	14	65	64	0	2	32	1.08
100871--100928	16	3.7	16	73	22	52	62	0	3	34	1.12
100866--101106	12	19.1	12	70	20	95	56	2	0	39	1.20
100904--101102	2	107.5	2	71	24	145	54	3	0	42	1.17
100878--101105	36	6.6	34	75	18	188	55	3	0	40	1.21
101270--101326	29	2.0	29	85	0	78	45	1	7	45	1.40
106124--106212	8	11.1	8	77	4	63	35	25	3	34	1.73
107403--107795	43	9.2	43	83	5	442	32	20	22	23	1.98
110368--110750	40	9.4	40	80	6	267	35	19	17	26	1.94
110449--110750	122	2.5	121	82	7	335	36	19	17	26	1.94
112289--112377	32	2.8	32	81	5	101	26	26	29	16	1.97

Tables:   1

The End!