Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002370.1 Hibiscus syriacus cultivar Beakdansim tig00004842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88286

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3056--3187
63
2.0
64
89
8
203
34
24
21
19
1.97
7644--7677
9
3.9
9
84
7
52
35
0
2
61
1.11
7643--7681
17
2.4
17
95
4
71
33
0
5
61
1.18
29719--29806
45
2.0
45
86
4
126
35
10
18
36
1.84
34227--34264
6
6.2
6
85
14
51
65
2
0
31
1.06
35758--35796
19
2.1
19
85
0
51
71
0
0
28
0.86
35784--35823
19
2.2
18
86
4
53
60
2
2
35
1.24
35805--36120
38
8.6
38
71
17
188
47
7
3
41
1.49
35918--36116
76
2.6
75
78
15
212
47
6
4
42
1.48
35934--36115
40
4.8
38
78
12
171
47
6
3
42
1.48
35972--36115
76
1.9
79
89
4
231
47
6
4
42
1.48
35914--36154
39
6.2
38
75
11
145
46
6
4
43
1.49
39494--39518
5
5.0
5
100
0
50
40
0
40
20
1.52
43642--43692
3
16.3
3
78
15
50
27
0
3
68
1.07
43642--43669
13
2.2
13
100
0
56
28
0
0
71
0.86
51797--51897
29
3.6
28
88
5
150
32
8
14
43
1.77
51797--51912
29
4.1
27
86
6
83
32
8
13
44
1.75
51908--52010
52
2.0
53
94
1
181
32
14
17
35
1.90
51998--52128
30
4.1
30
73
14
120
33
10
12
42
1.78
52045--52165
37
3.5
36
69
23
114
33
12
10
43
1.77
52015--52183
67
2.5
67
97
0
311
30
12
11
45
1.77
52891--52986
36
2.7
34
79
10
95
30
17
12
39
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52912--52986
35
2.1
36
85
7
100
36
20
10
33
1.87
53319--53668
133
2.6
134
84
0
441
26
30
18
24
1.98
53868--53918
3
16.3
3
78
15
50
27
0
3
68
1.07
53868--53895
13
2.2
13
100
0
56
28
0
0
71
0.86
57841--57960
64
1.9
63
84
1
159
36
23
17
22
1.94
58652--58704
23
2.3
23
86
0
79
16
22
28
32
1.96
65329--65465
46
3.0
46
86
6
145
19
25
24
29
1.98
65359--65465
23
4.7
23
95
0
187
18
27
26
28
1.98
66164--66233
27
2.6
27
76
0
68
28
18
15
37
1.92
70765--70793
12
2.3
13
94
5
51
41
13
44
0
1.44
71252--71416
84
2.0
84
97
0
312
22
9
15
52
1.71
71271--71436
84
2.0
84
84
2
219
25
7
18
48
1.74
77887--77928
17
2.6
16
85
7
57
64
2
2
30
1.19

Tables:   1

The End!