Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002371.1 Hibiscus syriacus cultivar Beakdansim tig00004844_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86593

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
503--551
22
2.3
22
85
3
64
38
6
2
53
1.38
4704--4732
15
1.9
15
100
0
58
34
31
0
34
1.58
5150--5183
12
2.8
12
83
16
52
8
17
29
44
1.79
5736--5784
19
2.6
19
93
0
80
71
4
2
22
1.13
8021--8061
13
3.2
13
86
6
57
31
2
0
65
1.05
8686--8739
26
2.1
26
89
3
83
24
14
11
50
1.75
10032--10082
26
2.0
25
88
11
77
13
15
3
66
1.39
11652--11730
37
2.3
35
82
10
99
70
1
16
11
1.22
19402--19563
81
2.0
81
93
0
279
37
27
19
16
1.93
23679--23725
21
2.2
21
92
0
76
14
8
10
65
1.45
23751--23794
21
2.1
21
82
0
52
47
2
13
36
1.56
26430--26519
31
2.9
30
80
9
101
46
12
5
35
1.65
29614--29718
50
2.1
50
100
0
210
28
9
27
34
1.88
30610--30660
26
2.0
26
84
7
68
19
13
31
35
1.91
44842--44866
13
1.9
13
100
0
50
56
16
12
16
1.68
45990--46027
18
2.1
18
95
0
67
31
10
15
42
1.81
47281--47319
21
1.9
19
85
10
51
51
7
10
30
1.64
52199--52234
19
1.9
19
88
5
56
13
13
13
58
1.64
52907--52955
2
24.5
2
100
0
98
51
0
0
48
1.00
53271--53306
2
18.0
2
100
0
72
50
0
0
50
1.00
56541--56953
38
11.2
37
76
12
345
46
3
6
44
1.46
56541--56963
76
5.8
73
80
11
410
45
3
6
44
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56933--56978
22
2.1
21
96
4
83
41
0
4
54
1.20
56909--57018
54
2.0
55
84
5
143
45
0
6
47
1.34
56933--56985
22
2.5
22
90
6
74
47
0
3
49
1.19
56953--57018
34
2.0
35
88
8
102
43
0
9
46
1.35
57033--57077
2
22.0
2
84
13
56
44
2
4
48
1.35
57033--57080
23
2.1
23
88
7
71
43
4
4
47
1.41
57080--57120
18
2.3
18
91
8
66
24
0
2
73
0.96
58367--58431
2
32.5
2
100
0
130
49
0
0
50
1.00
58669--58703
18
1.9
18
88
11
54
22
17
5
54
1.64
61831--62145
149
2.1
149
94
2
544
33
21
18
26
1.96
62784--62820
2
18.5
2
100
0
74
48
0
0
51
1.00
63062--63096
18
1.9
18
88
11
54
22
17
5
54
1.64
70503--70528
6
4.3
6
100
0
52
15
0
0
84
0.62
79915--80030
27
4.3
27
95
0
214
12
37
20
29
1.89
82175--82236
22
2.7
23
82
2
72
17
20
24
37
1.94
82162--82230
22
3.0
23
75
10
70
20
18
24
36
1.95
82773--82802
11
2.7
11
94
0
51
66
6
10
16
1.41

Tables:   1

The End!