genome.fa.s2373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002373.1 Hibiscus syriacus cultivar Beakdansim tig00004846_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114301

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10097--10122	11	2.4	11	100	0	52	69	7	0	23	1.14
12854--12883	2	15.0	2	100	0	60	50	0	0	50	1.00
13371--13429	23	2.6	23	83	0	73	22	25	23	28	1.99
14935--14964	12	2.5	12	100	0	60	0	23	0	76	0.78
19343--19373	2	16.0	2	93	6	55	51	0	0	48	1.00
20520--20557	16	2.5	15	91	4	58	47	2	0	50	1.15
21063--21094	15	2.1	15	94	0	55	40	21	15	21	1.91
21150--21385	37	6.6	37	78	14	228	44	11	19	25	1.83
21080--21329	103	2.4	102	87	2	349	42	10	20	27	1.83
21240--21542	36	8.4	36	77	9	246	41	11	17	29	1.85
21150--21526	181	2.1	172	89	4	556	42	11	18	27	1.84
21295--21605	141	2.2	140	90	4	484	41	11	17	29	1.85
22765--22947	95	1.9	95	89	2	287	31	19	17	32	1.95
24645--24687	10	4.3	10	90	0	59	83	0	2	13	0.74
24647--24689	17	2.5	17	88	11	61	81	0	2	16	0.79
28032--28086	2	28.0	2	96	3	103	50	0	0	49	1.00
29637--29683	22	2.1	22	92	0	76	36	2	14	46	1.57
33037--33128	34	2.8	32	82	9	112	64	14	1	20	1.35
35413--35461	16	3.0	16	81	3	53	63	0	4	32	1.13
37314--37368	20	2.8	20	97	0	101	32	21	20	25	1.97
40981--41038	20	2.7	20	76	10	53	31	20	24	24	1.98
42557--42626	23	3.0	23	85	0	95	24	22	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50926--50997	7	10.6	7	82	8	78	58	0	37	4	1.18
50926--50997	11	7.1	10	75	20	69	58	0	37	4	1.18
50926--51014	3	27.3	3	74	15	54	60	0	34	4	1.17
50926--51006	18	4.7	17	73	17	60	58	0	37	4	1.20
55961--55999	20	1.9	21	89	5	62	23	10	2	64	1.37
56358--56525	59	2.8	58	77	12	180	35	6	2	55	1.41
56364--56587	29	7.8	28	76	13	165	34	5	2	57	1.37
56501--56547	25	1.9	24	82	4	58	23	8	2	65	1.31
62475--62555	23	3.6	22	83	6	110	23	25	23	27	2.00
64803--64845	21	2.0	21	91	8	70	37	0	37	25	1.56
64849--64880	13	2.4	14	85	15	50	40	9	6	43	1.62
65235--65358	65	1.9	64	83	8	162	29	22	16	30	1.96
67469--67494	12	2.2	12	100	0	52	76	15	7	0	0.99
67452--67485	8	4.0	8	92	7	50	82	14	2	0	0.79
76410--76489	23	3.6	22	76	6	81	25	27	22	25	2.00
78731--78773	21	2.0	21	95	0	77	32	0	37	30	1.58
79165--79320	64	2.4	65	84	5	183	29	21	17	30	1.97
80134--80180	18	2.5	20	77	19	57	38	0	12	48	1.41
80134--80186	18	2.9	18	75	8	54	35	0	15	49	1.45
84219--84266	11	4.8	10	76	19	55	0	39	4	56	1.19
84217--84265	15	3.4	15	94	5	84	0	38	4	57	1.18
85135--85205	11	7.1	10	83	13	85	59	1	38	1	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85136--85205	15	4.9	14	80	17	67	58	1	38	1	1.16
85135--85204	20	3.5	20	81	15	67	58	1	38	1	1.16
85885--85941	22	2.6	21	81	10	60	35	3	0	61	1.13
85936--85990	25	2.2	25	83	3	76	36	3	0	60	1.15
85892--86031	29	5.3	27	78	15	125	35	5	1	57	1.31
86089--86226	30	4.6	29	78	6	125	51	1	5	42	1.33
87071--87097	13	2.1	13	100	0	54	37	14	25	22	1.93
87108--87134	4	6.8	4	100	0	54	25	0	0	74	0.83
90735--90814	5	14.8	5	77	14	79	7	22	51	18	1.71
90728--90814	22	4.0	22	100	0	174	9	22	49	18	1.76
90740--90815	17	4.9	16	73	16	63	9	22	50	18	1.75
90811--90909	9	10.3	9	75	10	72	30	27	26	16	1.96
90813--90887	19	3.9	19	78	13	82	30	30	24	14	1.95
90836--90910	29	2.5	31	85	8	111	30	26	25	17	1.97
98096--98153	5	10.8	5	78	14	62	6	22	51	18	1.70
98069--98099	7	4.4	7	95	0	53	29	29	25	16	1.96
98082--98154	22	3.2	22	94	3	119	12	23	46	17	1.82
98089--98126	17	2.2	17	100	0	76	10	23	47	18	1.79
98150--98219	9	7.3	9	79	9	59	28	25	28	17	1.97
98163--98220	20	2.9	21	87	10	86	31	24	25	18	1.98
98156--98219	29	2.2	28	89	10	94	29	26	26	17	1.97
98163--98220	9	5.9	10	80	15	68	31	24	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99936--100048	20	5.6	20	84	5	131	30	23	12	33	1.92
101202--101266	34	1.9	34	87	0	94	26	26	15	32	1.95
105249--105291	20	2.0	20	82	8	50	32	25	6	34	1.83
108712--108807	34	2.9	34	95	1	167	41	9	9	39	1.70
113195--113269	31	2.4	31	86	0	105	57	6	2	33	1.39

Tables:   1

The End!