genome.fa.s2374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002374.1 Hibiscus syriacus cultivar Beakdansim tig00004849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60651

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7405--7438	17	1.9	18	88	5	52	55	8	0	35	1.31
7488--7534	26	1.9	25	87	12	71	53	4	2	40	1.32
8176--8234	25	2.3	27	82	5	68	61	0	1	37	1.07
25316--25373	2	29.5	2	96	3	109	51	0	0	48	1.00
29481--29594	60	1.9	60	87	0	165	33	18	13	35	1.89
31171--31205	14	2.7	13	87	12	54	48	0	0	51	1.00
31171--31204	13	2.6	14	90	9	54	47	0	0	52	1.00
31304--31461	21	7.8	20	72	7	86	38	25	17	18	1.92
31428--31637	20	10.5	20	79	6	192	37	25	17	20	1.93
32318--32364	24	2.0	24	87	8	69	25	14	21	38	1.92
34893--34986	19	5.2	19	83	13	135	13	22	17	46	1.83
34874--34986	53	2.2	52	98	1	217	13	23	17	45	1.84
35049--35236	19	10.6	19	76	17	199	45	17	22	14	1.85
35049--35179	53	2.5	52	97	2	244	45	17	22	13	1.84
35081--35236	71	2.2	72	95	1	278	46	17	21	15	1.84
35049--35230	52	3.5	52	88	7	219	46	17	21	14	1.84
35245--35291	20	2.4	19	85	3	58	19	19	17	44	1.87
35263--35342	19	4.5	19	81	15	116	15	22	17	45	1.85
35226--35342	53	2.2	52	93	1	198	15	23	17	43	1.87
35449--35484	13	2.6	14	86	4	56	47	22	0	30	1.52
37463--37519	14	3.7	14	77	20	60	45	22	21	10	1.82
37444--37536	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37407--37541	19	7.6	19	76	16	128	45	23	19	11	1.82
37555--37705	20	7.6	20	84	3	187	19	20	25	34	1.96
37532--37705	60	2.9	60	81	0	204	20	19	24	35	1.95
37692--37774	21	4.0	21	73	6	78	25	16	24	33	1.96
37672--37770	42	2.4	43	77	11	100	21	18	23	37	1.94
40894--40958	33	2.0	33	96	3	123	33	29	9	27	1.88
41787--41811	2	12.5	2	100	0	50	52	0	0	48	1.00
46462--46495	17	1.9	18	88	5	52	23	11	0	64	1.26
46534--46582	25	2.0	25	91	0	80	51	8	20	20	1.73
49232--49308	39	2.0	39	84	0	100	28	20	16	33	1.95
49301--49384	39	2.2	39	91	0	132	25	26	10	38	1.88
52697--52735	17	2.3	17	95	0	69	35	10	46	7	1.67

Tables:   1

The End!