Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002375.1 Hibiscus syriacus cultivar Beakdansim tig00004853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123093

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6318--6366
10
5.2
10
71
14
50
24
2
2
71
1.07
6336--6404
17
3.9
17
73
15
59
36
4
0
59
1.17
6350--6444
20
4.8
21
70
17
78
38
4
1
55
1.26
6336--6454
21
6.2
19
70
16
70
37
4
0
57
1.24
9278--9329
19
2.6
21
77
22
58
53
3
0
42
1.19
19290--19469
97
1.8
98
89
3
283
20
21
16
42
1.89
20078--20108
16
1.9
16
100
0
62
22
12
6
58
1.58
29740--29774
18
1.9
18
94
0
61
34
37
8
20
1.83
30079--30106
14
2.0
14
100
0
56
42
14
14
28
1.84
44237--44539
156
1.9
155
81
9
366
43
11
13
31
1.80
49566--49616
19
2.6
20
90
3
77
43
23
17
15
1.88
49566--49843
20
13.6
20
75
8
148
39
19
22
18
1.93
49711--49833
63
2.0
63
91
0
201
36
17
26
19
1.94
49670--49843
83
2.1
83
89
0
258
36
18
25
20
1.95
49830--49873
20
2.2
20
91
0
70
54
15
18
11
1.70
49951--49994
6
7.5
6
97
2
81
31
52
15
0
1.44
50685--50854
6
28.5
6
99
0
333
0
16
50
32
1.45
50942--51199
20
12.6
20
74
9
135
17
23
20
39
1.92
50952--51095
63
2.3
63
92
0
234
19
27
18
35
1.95
50957--51072
43
2.8
40
81
7
142
19
28
18
32
1.96
50944--51095
43
3.7
40
78
7
133
19
26
18
36
1.94
51149--51199
19
2.6
20
90
3
77
15
17
23
43
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51728--51782
13
4.2
13
75
13
58
49
12
3
34
1.59
51768--51866
33
3.0
33
94
1
164
45
15
7
32
1.73
51861--51900
21
1.9
21
94
0
71
47
7
15
30
1.72
68991--69055
29
2.2
31
83
10
82
44
4
1
49
1.32
73595--73619
2
12.5
2
100
0
50
52
0
0
48
1.00
77296--77417
61
2.0
62
82
6
151
48
1
15
34
1.55
83169--83239
23
3.1
22
69
18
56
40
2
1
54
1.23
84252--84362
36
3.1
34
82
6
132
17
22
24
36
1.95
92166--92219
21
2.6
21
84
0
72
31
27
20
20
1.97
92231--92264
6
5.8
6
89
3
52
32
50
17
0
1.47
92898--92966
21
3.3
21
78
8
86
30
28
20
20
1.97
92962--93030
20
3.4
20
74
18
70
26
21
15
36
1.94
92955--93038
41
2.0
41
93
0
141
26
21
16
35
1.94
92915--93011
21
4.7
21
71
16
76
27
25
18
27
1.98
93048--93208
21
7.7
21
82
9
204
23
21
25
29
1.99
93072--93188
62
1.9
62
91
3
191
23
22
23
31
1.98
94735--94765
16
1.9
16
100
0
62
29
19
25
25
1.99
100691--100757
29
2.4
28
87
5
82
29
19
11
38
1.88
100702--100760
29
2.0
29
100
0
118
28
16
10
44
1.81
110441--110474
17
1.9
18
88
5
52
55
8
0
35
1.31
110524--110570
26
1.9
25
87
12
71
53
4
2
40
1.32
111206--111264
25
2.3
27
82
5
68
61
0
1
37
1.07

Tables:   1

The End!