Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002376.1 Hibiscus syriacus cultivar Beakdansim tig00004854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 137088
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Found at i:8690 original size:9 final size:9
Alignment explanation
Indices: 8676--8817 Score: 57
Period size: 9 Copynumber: 15.4 Consensus size: 9
8666 GAGAAAAATG
8676 AAAAATGAA
1 AAAAATGAA
8685 AAAAATGAA
1 AAAAATGAA
*
8694 AAATAATAATAA
1 AAA-AAT--GAA
*
8706 TAAAAATGAG
1 -AAAAATGAA
*
8716 AATAA-GAA
1 AAAAATGAA
8724 AAAGAA-GAAAA
1 AAA-AATG--AA
*
8735 GAAAAATGAG
1 -AAAAATGAA
*
8745 AAGAATGAA
1 AAAAATGAA
*
8754 AAATAATAAA
1 AAA-AATGAA
*
8764 AAAAAGGGAA
1 AAAAA-TGAA
*
8774 AAAGA-GAAA
1 AAAAATG-AA
8783 AAAAATG--
1 AAAAATGAA
8790 AAAAAT--A
1 AAAAATGAA
8797 AAAAATGAA
1 AAAAATGAA
8806 AAAAAT-AA
1 AAAAATGAA
8814 AAAA
1 AAAA
8818 GAAAAAGAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 33
0.68 0.10 0.22
Matches are distributed among these distances:
7 12 0.12
8 11 0.11
9 43 0.42
10 20 0.20
11 4 0.04
12 9 0.09
13 3 0.03
ACGTcount: A:0.75, C:0.00, G:0.13, T:0.11
Consensus pattern (9 bp):
AAAAATGAA
Found at i:8725 original size:14 final size:14
Alignment explanation
Indices: 8670--8757 Score: 61
Period size: 15 Copynumber: 5.8 Consensus size: 14
8660 ATAAAAGAGA
*
8670 AAAATGAAAAATGAAA
1 AAAA-GAAAAATG-AG
* *
8686 AAAATGAAAAATAAT
1 AAAA-GAAAAATGAG
*
8701 AATAATAAAAATGAG
1 AA-AAGAAAAATGAG
8716 AATAAGAAAAA-GAAG
1 AA-AAGAAAAATG-AG
8731 AAAAGAAAAATGAG
1 AAAAGAAAAATGAG
8745 AAGAATGAAAAAT
1 AA-AA-GAAAAAT
8758 AATAAAAAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
14 13 0.21
15 27 0.44
16 21 0.34
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.14
Consensus pattern (14 bp):
AAAAGAAAAATGAG
Found at i:8800 original size:60 final size:61
Alignment explanation
Indices: 8662--8817 Score: 167
Period size: 60 Copynumber: 2.6 Consensus size: 61
8652 AAGAATAAAT
* * *
8662 AAAAGAGAAAAATGAAAAATGAAAAAAATGAAAAATAATAATAATAAAAATGAGAATAAGAA
1 AAAAAAGAAAAAT-AAAAATGAAAAAAATGAAAAATAATAATAATAAAAAGGAGAAAAAGAA
* * * * *
8724 AAAGAAG-AAAAGAAAAATGAGAAGAATGAAAAATAATAA-AA-AAAAGGGA-AAAAGAGAA
1 AAAAAAGAAAAATAAAAATGAAAAAAATGAAAAATAATAATAATAAAAAGGAGAAAA-AGAA
*
8782 AAAAAATGAAAAATAAAAAATGAAAAAAATAAAAAA
1 AAAAAA-GAAAAAT-AAAAATGAAAAAAATGAAAAA
8818 GAAAAAGAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
57 3 0.04
58 15 0.19
59 3 0.04
60 29 0.38
61 22 0.29
62 5 0.06
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (61 bp):
AAAAAAGAAAAATAAAAATGAAAAAAATGAAAAATAATAATAATAAAAAGGAGAAAAAGAA
Found at i:8816 original size:6 final size:7
Alignment explanation
Indices: 8668--8808 Score: 75
Period size: 7 Copynumber: 19.9 Consensus size: 7
8658 AAATAAAAGA
8668 GAAAAAT
1 GAAAAAT
8675 GAAAAAT
1 GAAAAAT
8682 GAAAAAAAT
1 G--AAAAAT
8691 GAAAAAT
1 GAAAAAT
*
8698 AATAATAAT
1 GA-AA-AAT
8707 -AAAAAT
1 GAAAAAT
8713 GAGAATAA-
1 GA-AA-AAT
8721 GAAAAA-
1 GAAAAAT
*
8727 GAAGAAAA
1 GAA-AAAT
8735 GAAAAAT
1 GAAAAAT
8742 GAGAAGAAT
1 GA-AA-AAT
8751 GAAAAAT
1 GAAAAAT
8758 -AATAAA-
1 GAA-AAAT
*
8764 -AAAAAGG
1 GAAAAA-T
8771 GAAAAA-
1 GAAAAAT
*
8777 GAGAAA-
1 GAAAAAT
8783 -AAAAAT
1 GAAAAAT
8789 GAAAAAT
1 GAAAAAT
*
8796 AAAAAAT
1 GAAAAAT
8803 GAAAAA
1 GAAAAA
8809 AATAAAAAAG
Statistics
Matches: 111, Mismatches: 6, Indels: 34
0.74 0.04 0.23
Matches are distributed among these distances:
5 7 0.06
6 17 0.15
7 51 0.46
8 19 0.17
9 17 0.15
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (7 bp):
GAAAAAT
Found at i:8832 original size:17 final size:16
Alignment explanation
Indices: 8655--8823 Score: 72
Period size: 16 Copynumber: 11.0 Consensus size: 16
8645 TCGCTTGAAG
* *
8655 AATAAATAAAAGAGAAA
1 AATAAA-AAATGAAAAA
*
8672 AATGAAAAATGAAAAA
1 AATAAAAAATGAAAAA
* *
8688 AATGAAAAAT-AATAAT
1 AATAAAAAATGAA-AAA
* *
8704 AAT-AAAAATGAGAAT
1 AATAAAAAATGAAAAA
* *
8719 AA-GAAAAA-GAAGAA
1 AATAAAAAATGAAAAA
* * *
8733 AA-GAAAAATGAGAAG
1 AATAAAAAATGAAAAA
* *
8748 AATGAAAAAT--AATA
1 AATAAAAAATGAAAAA
**
8762 AA-AAAAAGGGAAAAA
1 AATAAAAAATGAAAAA
*
8777 GAGAAAAAAAATG--AAA
1 -A-ATAAAAAATGAAAAA
8793 AATAAAAAATGAAAAA
1 AATAAAAAATGAAAAA
8809 AATAAAAAA-GAAAAA
1 AATAAAAAATGAAAAA
8824 GAAATAAAAG
Statistics
Matches: 119, Mismatches: 21, Indels: 26
0.72 0.13 0.16
Matches are distributed among these distances:
13 4 0.03
14 23 0.19
15 33 0.28
16 47 0.39
17 6 0.05
18 6 0.05
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (16 bp):
AATAAAAAATGAAAAA
Found at i:10140 original size:37 final size:36
Alignment explanation
Indices: 10086--10157 Score: 126
Period size: 37 Copynumber: 2.0 Consensus size: 36
10076 AAACAGGTCA
10086 ATCTTAAGCCTTCACGGAAGAGTAGTGAAGCAAACC
1 ATCTTAAGCCTTCACGGAAGAGTAGTGAAGCAAACC
*
10122 ATCTGTAAGCCTTCACGGAAGATTAGTGAAGCAAAC
1 ATCT-TAAGCCTTCACGGAAGAGTAGTGAAGCAAAC
10158 TCATTTTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.12
37 30 0.88
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (36 bp):
ATCTTAAGCCTTCACGGAAGAGTAGTGAAGCAAACC
Found at i:10249 original size:51 final size:51
Alignment explanation
Indices: 10162--10493 Score: 260
Period size: 51 Copynumber: 6.3 Consensus size: 51
10152 GCAAACTCAT
* * * *
10162 TTTA-TGAAGATCGAGTCCTACACTCTCTGAAGGAATAGGGAGCGGACACG
1 TTTATTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGAGAGCGGACACG
* * *
10212 TTTGTTAAAGATTGAGTCCTATACTCTCTGAAAGAATAGGGAGCGGAC-CTG
1 TTTATTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGAGAGCGGACAC-G
* * *
10263 TTTATTGAAGATTTTTCGAGTTCTATACTCTCTG-AAGAAATAGAGAGCGGACCCAT
1 TTTATTGAAGA---TT-GAGTCCTATACTCTCTGAAAG-AATAGAGAGCGGACAC-G
* ** * *
10319 TTTATGGAAGATTGTTCAAGTATTATACTCTCTGAATGAATAGAGAGCAGACACG
1 TTTATTGAAGATTG----AGTCCTATACTCTCTGAAAGAATAGAGAGCGGACACG
* * * *
10374 TTTATTGAAGATCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGAC-CTG
1 TTTATTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGAGAGCGGACAC-G
* * * * *
10425 TTTGTTGAAGATTATTTGAGTCTTATACTCTCTGAATGAATAGAGAGCAGACACA
1 TTTATTGAAG---A-TTGAGTCCTATACTCTCTGAAAGAATAGAGAGCGGACACG
10480 TTT-TATGAAGATTG
1 TTTAT-TGAAGATTG
10494 TTCGAGTCTT
Statistics
Matches: 232, Mismatches: 30, Indels: 39
0.77 0.10 0.13
Matches are distributed among these distances:
50 5 0.02
51 92 0.40
52 2 0.01
53 2 0.01
54 7 0.03
55 82 0.35
56 40 0.17
57 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (51 bp):
TTTATTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGAGAGCGGACACG
Found at i:10376 original size:162 final size:161
Alignment explanation
Indices: 10183--10529 Score: 504
Period size: 162 Copynumber: 2.1 Consensus size: 161
10173 CGAGTCCTAC
* * *
10183 ACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTAAAGATTGAGTCCTATACTCTCTGAAAGAA
1 ACTCTCTGAAGGAATAGGGAGCAGACACGTTTATTAAAGATCGAGTCCTATACTCTCTGAAAGAA
10248 TAGGGAGCGGACCTGTTTATTGAAGATT-TTTCGAGT-TCTATACTCTCTGAA-GAAATAGAGAG
66 TAGGGAGCGGACCTGTTTATTGAAGATTATTT-GAGTCT-TATACTCTCTGAATG-AATAGAGAG
* *
10310 CGGACCCATTTTATGGAAGATTGTTCAAGTATTAT
128 CAGACACATTTTAT-GAAGATTGTTCAAGTATTAT
* * * * *
10345 ACTCTCTGAATGAATAGAGAGCAGACACGTTTATTGAAGATCGAGTCTTATACTCTCTGAAGGAA
1 ACTCTCTGAAGGAATAGGGAGCAGACACGTTTATTAAAGATCGAGTCCTATACTCTCTGAAAGAA
*
10410 TAGGGAGCGGACCTGTTTGTTGAAGATTATTTGAGTCTTATACTCTCTGAATGAATAGAGAGCAG
66 TAGGGAGCGGACCTGTTTATTGAAGATTATTTGAGTCTTATACTCTCTGAATGAATAGAGAGCAG
* *
10475 ACACATTTTATGAAGATTGTTCGAGTCTTAT
131 ACACATTTTATGAAGATTGTTCAAGTATTAT
10506 ACT-TCCTGAAGGAATAGGGAGCAG
1 ACTCT-CTGAAGGAATAGGGAGCAG
10530 GCTCATCATT
Statistics
Matches: 166, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
160 1 0.01
161 38 0.23
162 122 0.73
163 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (161 bp):
ACTCTCTGAAGGAATAGGGAGCAGACACGTTTATTAAAGATCGAGTCCTATACTCTCTGAAAGAA
TAGGGAGCGGACCTGTTTATTGAAGATTATTTGAGTCTTATACTCTCTGAATGAATAGAGAGCAG
ACACATTTTATGAAGATTGTTCAAGTATTAT
Found at i:10529 original size:55 final size:53
Alignment explanation
Indices: 10161--10527 Score: 321
Period size: 55 Copynumber: 6.9 Consensus size: 53
10151 AGCAAACTCA
* *
10161 TTTTATGAAGA---TCGAGTCCTACACTCTCTGAAGGAATAGGGAGCGGACAC
1 TTTTATGAAGATTTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
* * *
10211 GTTTGT-TAAAGA--TT-GAGTCCTATACTCTCTGAAAGAATAGGGAGCGGAC-C
1 -TTT-TATGAAGATTTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
* * *
10261 TGTTTATTGAAGATTTTTCGAGT-TCTATACTCTCTGAAGAAATAGAGAGCGGACCC
1 T-TTTA-TGAAGA-TTTTCGAGTCT-TATACTCTCTGAAGGAATAGGGAGCGGACAC
* * * * *
10317 ATTTTATGGAAGATTGTTCAAGTATTATACTCTCTGAATGAATAGAGAGCAGACAC
1 -TTTTAT-GAAGATT-TTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
*
10373 GTTTATTGAAGA---TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGAC-C
1 TTTTA-TGAAGATTTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
* * * * *
10423 TGTTTGTTGAAGATTATTTGAGTCTTATACTCTCTGAATGAATAGAGAGCAGACAC
1 T-TTT-ATGAAGATT-TTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
10479 ATTTTATGAAGATTGTTCGAGTCTTATACT-TCCTGAAGGAATAGGGAGC
1 -TTTTATGAAGATT-TTCGAGTCTTATACTCT-CTGAAGGAATAGGGAGC
10528 AGGCTCATCA
Statistics
Matches: 261, Mismatches: 30, Indels: 46
0.77 0.09 0.14
Matches are distributed among these distances:
49 2 0.01
50 4 0.02
51 87 0.33
52 2 0.01
54 3 0.01
55 112 0.43
56 48 0.18
57 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (53 bp):
TTTTATGAAGATTTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC
Found at i:14780 original size:21 final size:22
Alignment explanation
Indices: 14750--14829 Score: 85
Period size: 21 Copynumber: 3.7 Consensus size: 22
14740 CAGAACCCTA
* *
14750 GGGGGTATCGATTCCCCT-ATG
1 GGGGGAATCGATTCCCCTCAAG
* *
14771 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGATTCCCC-TCAAG
*
14794 GGGGGAATCGGTT-CCCTCAAG
1 GGGGGAATCGATTCCCCTCAAG
14815 GGGGG-ATCGATTCCC
1 GGGGGAATCGATTCCC
14830 TCTGCACTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.12
21 26 0.52
22 4 0.08
23 14 0.28
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.23
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTCAAG
Found at i:14817 original size:20 final size:21
Alignment explanation
Indices: 14771--14831 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
14761 TTCCCCTATG
14771 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
14794 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
14814 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
14832 TGCACTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:20547 original size:22 final size:22
Alignment explanation
Indices: 20493--20550 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
20483 CCATTCAGGG
* *
20493 GGGAATTGGTACCCCCTTGGGA
1 GGGAATCGGTTCCCCCTTGGGA
20515 GGGAATCGGTTCCCCCTTGGGA
1 GGGAATCGGTTCCCCCTTGGGA
20537 GGGAATCGGTTCCC
1 GGGAATCGGTTCCC
20551 TCTGAGCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.16, C:0.26, G:0.36, T:0.22
Consensus pattern (22 bp):
GGGAATCGGTTCCCCCTTGGGA
Found at i:21248 original size:18 final size:18
Alignment explanation
Indices: 21225--21271 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
21215 TCGAAAGGAA
21225 AAAAAGAAAAAAAAAGAT
1 AAAAAGAAAAAAAAAGAT
* *
21243 AAAAAGATAAAAAAATAT
1 AAAAAGAAAAAAAAAGAT
* *
21261 GAAAATAAAAA
1 AAAAAGAAAAA
21272 TAAATAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAGAT
Found at i:21281 original size:16 final size:16
Alignment explanation
Indices: 21233--21283 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
21223 AAAAAAAGAA
*
21233 AAAAAAAGATAAAAAGAT
1 AAAAAAATAT-AAAA-AT
*
21251 AAAAAAATATGAAAAT
1 AAAAAAATATAAAAAT
21267 AAAAATAA-ATAAAAAT
1 AAAAA-AATATAAAAAT
21283 A
1 A
21284 TTAATATAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 15 0.52
17 5 0.17
18 9 0.31
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAAAATATAAAAAT
Found at i:22570 original size:15 final size:14
Alignment explanation
Indices: 22516--22580 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 14
22506 TGAAAAAAAT
*
22516 ATAAAA-AATAAAA
1 ATAAAATAATAATA
22529 ATAAAAATGAATAAATA
1 AT-AAAAT-AAT-AATA
* *
22546 GTAATGATAATAATAA
1 ATAA-AATAATAAT-A
22562 ATAAAATAATAATA
1 ATAAAATAATAATA
22576 ATAAA
1 ATAAA
22581 TGTTTCGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 2 0.05
14 10 0.24
15 11 0.27
16 12 0.29
17 6 0.15
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.25
Consensus pattern (14 bp):
ATAAAATAATAATA
Found at i:22591 original size:24 final size:23
Alignment explanation
Indices: 22564--22620 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
22554 AATAATAAAT
22564 AAAATA-ATAATAATAAATGTTTCGA
1 AAAATATATAAT-ATAAAT-TTTC-A
* *
22589 AAACTATATAATATATATTTTCA
1 AAAATATATAATATAAATTTTCA
22612 AAAATATAT
1 AAAATATAT
22621 TTTTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 9 0.32
24 4 0.14
25 10 0.36
26 5 0.18
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.37
Consensus pattern (23 bp):
AAAATATATAATATAAATTTTCA
Found at i:22620 original size:14 final size:14
Alignment explanation
Indices: 22601--22671 Score: 53
Period size: 14 Copynumber: 5.4 Consensus size: 14
22591 ACTATATAAT
22601 ATATATTTTCAAAA
1 ATATATTTTCAAAA
*
22615 ATATATTTTTAAAA
1 ATATATTTTCAAAA
* *
22629 A-A-ATATT---AT
1 ATATATTTTCAAAA
22638 ATATATTTTCAAAA
1 ATATATTTTCAAAA
* *
22652 AAATATTTTTAAAA
1 ATATATTTTCAAAA
22666 ACTATA
1 A-TATA
22672 ATATATATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
9 2 0.05
10 1 0.02
11 4 0.09
12 4 0.09
13 1 0.02
14 28 0.65
15 3 0.07
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATATATTTTCAAAA
Found at i:22641 original size:23 final size:23
Alignment explanation
Indices: 22615--22658 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
22605 ATTTTCAAAA
*
22615 ATATATTTTTAAAAAAATATTAT
1 ATATATTTTCAAAAAAATATTAT
22638 ATATATTTTCAAAAAAATATT
1 ATATATTTTCAAAAAAATATT
22659 TTTAAAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATATTTTCAAAAAAATATTAT
Found at i:22702 original size:40 final size:39
Alignment explanation
Indices: 22631--23001 Score: 293
Period size: 40 Copynumber: 9.3 Consensus size: 39
22621 TTTTAAAAAA
* * *
22631 ATATTATATATAT-TTTCAAAAAAATATTTTTAAAAACTAT
1 ATATTATATATATAGTT-ATAAAAAT-GTTTTAAAAACTAT
*
22671 A-ATATATATATATA-TATATATAAAAGGTTTTAAAAACTAT
1 ATAT-TATATATATAGT-TATA-AAAATGTTTTAAAAACTAT
*
22711 ATATTATATATA-AGTTTTCAAAAATGTTTTTAAAAACTAT
1 ATATTATATATATAGTTAT-AAAAATG-TTTTAAAAACTAT
* *
22751 ATAATATATATATATA-TATTTCAAAAATATTTTTAAAAACTAT
1 AT-AT-TATATATATAGT-TAT-AAAAAT-GTTTTAAAAACTAT
* *
22794 ATCTTATATATA-AGTTTTCAAAAATGTTTTTTAAAAACTAT
1 ATATTATATATATAGTTAT-AAAAATG--TTTTAAAAACTAT
*
22835 AATATT-TATATATA--TATTAAAAATGTTCTAAAAACTAT
1 -ATATTATATATATAGTTA-TAAAAATGTTTTAAAAACTAT
* * * *
22873 ATATTATTTATAAAGTTTTCAAAAATATTTTAAAAAACTAT
1 ATATTATATATATAGTTAT-AAAAATGTTTT-AAAAACTAT
*
22914 ATA--ATATATATA-TT-TCAAAAATGTTTTCAAAACTAT
1 ATATTATATATATAGTTAT-AAAAATGTTTTAAAAACTAT
*
22950 ATATTATATATGTAGTT-TAAAAATGTTTTAAAAAACTAT
1 ATATTATATATATAGTTATAAAAATGTTTT-AAAAACTAT
* *
22989 ATAATGTATATAT
1 ATATTATATATAT
23002 TTTTCAAAAA
Statistics
Matches: 278, Mismatches: 25, Indels: 57
0.77 0.07 0.16
Matches are distributed among these distances:
36 11 0.04
37 17 0.06
38 39 0.14
39 39 0.14
40 81 0.29
41 50 0.18
42 15 0.05
43 26 0.09
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (39 bp):
ATATTATATATATAGTTATAAAAATGTTTTAAAAACTAT
Found at i:22727 original size:27 final size:30
Alignment explanation
Indices: 22679--22734 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
22669 ATAATATATA
22679 TATATATATATATAAAAGGTTTT-AAAAAC
1 TATATATATATATAAAAGGTTTTCAAAAAC
*
22708 TATATAT-TATATATAA-GTTTTCAAAAA
1 TATATATATATATAAAAGGTTTTCAAAAA
22735 TGTTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 5 0.20
28 13 0.52
29 7 0.28
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (30 bp):
TATATATATATATAAAAGGTTTTCAAAAAC
Found at i:22999 original size:39 final size:40
Alignment explanation
Indices: 22588--23079 Score: 347
Period size: 38 Copynumber: 12.6 Consensus size: 40
22578 AAATGTTTCG
*
22588 AAAACTATAT-A-ATATATAT--TTTCAAAAATATATTTTTA
1 AAAACTATATAATATATATATAGTTTC-AAAA-ATGTTTTTA
* *
22626 AAAA--A-AT-AT-TATATATATTTTCAAAAAAATATTTTTA
1 AAAACTATATAATATATATATAGTTTC--AAAAATGTTTTTA
* *
22663 AAAACTATAATATATATATATATA-TAT-ATAAAA-GGTTTTA
1 AAAACTAT-ATA-ATATATATATAGTTTCA-AAAATGTTTTTA
*
22703 AAAACTATATATTATATATA-AGTTTTCAAAAATGTTTTTA
1 AAAACTATATAATATATATATAG-TTTCAAAAATGTTTTTA
* *
22743 AAAACTATATAATATATATATATATATTTCAAAAATATTTTTA
1 AAAACTATAT-A-ATATATATATA-GTTTCAAAAATGTTTTTA
**
22786 AAAACTATATCTTATATATA-AGTTTTCAAAAATGTTTTTTA
1 AAAACTATATAATATATATATAG-TTTCAAAAATG-TTTTTA
* *
22827 AAAACTATA-ATATTTATATATA-TATT-AAAAATG-TTCTA
1 AAAACTATATA-ATATATATATAGT-TTCAAAAATGTTTTTA
* * * * *
22865 AAAACTATATATTATTTATAAAGTTTTCAAAAATATTTTAA
1 AAAACTATATAATATATATATAG-TTTCAAAAATGTTTTTA
*
22906 AAAACTATAT-A-ATATATATA-TTTCAAAAATG-TTTTC
1 AAAACTATATAATATATATATAGTTTCAAAAATGTTTTTA
* * *
22942 AAAACTATATATTATATATGTAGTTT-AAAAATGTTTTAA
1 AAAACTATATAATATATATATAGTTTCAAAAATGTTTTTA
* * * *
22981 AAAACTATATAATGTATATAT-TTTTCAAAAACCGTTTTCTG
1 AAAACTATATAATATATATATAGTTTCAAAAA-TGTTTT-TA
** ** *
23022 AAAA-T-TAT-ATAT-TATATTTTTTCAAAAACATTTTCA
1 AAAACTATATAATATATATATAGTTTCAAAAATGTTTTTA
*
23058 AAAACTATATTATATATATATA
1 AAAACTATATAATATATATATA
23080 TATATATATA
Statistics
Matches: 366, Mismatches: 46, Indels: 82
0.74 0.09 0.17
Matches are distributed among these distances:
35 10 0.03
36 18 0.05
37 39 0.11
38 71 0.19
39 56 0.15
40 68 0.19
41 56 0.15
42 9 0.02
43 31 0.08
44 8 0.02
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (40 bp):
AAAACTATATAATATATATATAGTTTCAAAAATGTTTTTA
Found at i:23075 original size:2 final size:2
Alignment explanation
Indices: 23063--23093 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
23053 TTTCAAAAAC
23063 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23094 ATAAAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23076 original size:38 final size:38
Alignment explanation
Indices: 22583--23076 Score: 267
Period size: 40 Copynumber: 12.6 Consensus size: 38
22573 ATAATAAATG
* *
22583 TTTCGAAAACTATA-TA-ATATATATTTTCAAAAATATAT
1 TTTCAAAAACTATATTATATATATTTTTTC-AAAA-ATAT
* * ***
22621 TTTTAAAAA-AATATTATATATATTTTCAAAAAAATAT
1 TTTCAAAAACTATATTATATATATTTTTTCAAAAATAT
* * * **
22658 TTTTAAAAACTATAATATATATATATATATAT-ATAAAAGGT
1 TTTCAAAAACTAT-AT-TATATATAT-TTTTTCA-AAAATAT
** *
22699 TTT-AAAAACTATATATTATATATAAGTTTTCAAAAATGT
1 TTTCAAAAAC--TATATTATATATATTTTTTCAAAAATAT
*
22738 TTTTAAAAACTATATAATATATATATATATATTTCAAAAATAT
1 TTTCAAAAACTATAT--TATATATAT-T-T-TTTCAAAAATAT
* ** *
22781 TTTTAAAAACTATATCTTATATATAAGTTTTCAAAAATGTT
1 TTTCAAAAACTATA--TTATATATATTTTTTCAAAAAT-AT
* * * * *
22822 TTTTAAAAACTATAATATTTATATATATATT-AAAAATGT
1 TTTCAAAAACTAT-AT-TATATATATTTTTTCAAAAATAT
* * **
22861 TCT-AAAAACTATATATTATTTATAAAGTTTTCAAAAATAT
1 TTTCAAAAAC--TATATTATATAT-ATTTTTTCAAAAATAT
* * * *
22901 TTTAAAAAACTATATAATATATA-TATTTCAAAAATGT
1 TTTCAAAAACTATATTATATATATTTTTTCAAAAATAT
* *
22938 TTTC-AAAACTATA-TATTATATATGTAGTTT-AAAAATGT
1 TTTCAAAAACTATATTA-TATATAT-T-TTTTCAAAAATAT
* * * **
22976 TTTAAAAAACTATATAATGTATATATTTTTCAAAAACCGT
1 TTTCAAAAACTATATTATATATAT-TTTTTCAAAAA-TAT
* * *
23016 TTTCTGAAAATTATA-TAT-TATATTTTTTCAAAAACAT
1 TTTC-AAAAACTATATTATATATATTTTTTCAAAAATAT
23053 TTTCAAAAACTATATTATATATAT
1 TTTCAAAAACTATATTATATATAT
23077 ATATATATAT
Statistics
Matches: 361, Mismatches: 58, Indels: 74
0.73 0.12 0.15
Matches are distributed among these distances:
35 1 0.00
36 23 0.06
37 39 0.11
38 63 0.17
39 69 0.19
40 76 0.21
41 51 0.14
42 5 0.01
43 33 0.09
45 1 0.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTCAAAAACTATATTATATATATTTTTTCAAAAATAT
Found at i:40566 original size:16 final size:16
Alignment explanation
Indices: 40542--40575 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
40532 TATCGCCGAC
*
40542 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
40558 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
40574 CG
1 CG
40576 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:58122 original size:2 final size:2
Alignment explanation
Indices: 58115--58175 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
58105 CGTTCAAAAC
58115 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58157 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
58176 ACTCACCATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:66369 original size:2 final size:2
Alignment explanation
Indices: 66358--66393 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
66348 CATCTCAATC
66358 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66394 TTTCACAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:66816 original size:18 final size:17
Alignment explanation
Indices: 66783--66816 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
66773 TTAATACTAA
66783 ATAAAATATCAAAATAT
1 ATAAAATATCAAAATAT
*
66800 ATAAAATCATTAAAATA
1 ATAAAAT-ATCAAAATA
66817 AAACAGACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAAAATATCAAAATAT
Found at i:69894 original size:103 final size:103
Alignment explanation
Indices: 69669--69886 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
69659 GTCGAGGGTC
*
69669 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
* *
69734 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
69772 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
*
69837 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
69875 TATGTGGTCCTT
1 TATGTGGTCCTT
69887 ATGGACATTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:69936 original size:23 final size:23
Alignment explanation
Indices: 69903--69968 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
69893 ATTATTATAT
* *
69903 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACAC
* *
69926 GGCACTCCGGTGCAATTATACAT
1 GGCACTACGGTGCAATTATACAC
*
69949 GGCACTTCGGTGCAATTATA
1 GGCACTACGGTGCAATTATA
69969 TGAGCTGTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACAC
Found at i:75513 original size:18 final size:19
Alignment explanation
Indices: 75480--75516 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75470 TGGTTATAAC
75480 TATATGTGATTATATGTAT
1 TATATGTGATTATATGTAT
*
75499 TATAT-TGATTGTATGTAT
1 TATATGTGATTATATGTAT
75517 GCATGACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (19 bp):
TATATGTGATTATATGTAT
Found at i:76661 original size:107 final size:103
Alignment explanation
Indices: 76468--76686 Score: 357
Period size: 107 Copynumber: 2.1 Consensus size: 103
76458 GTCGAGGGTC
* *
76468 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCATTCGGGACATATATGCATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
76533 TTGATCCTTAGCATATATATATATATGATTCTTAAGGAATGA
66 TTGATCCCTAGC----ATATATATATGATTCTTAAGGAATGA
76575 TATGTGGTCATTCGGGACATATATGCATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCATTCGGGACATATATGCATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* *
76640 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATATATATGATTCTTAAGGAATGA
76678 TATGTGGTC
1 TATGTGGTC
76687 CTTATGGACA
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
103 34 0.32
107 73 0.68
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (103 bp):
TATGTGGTCATTCGGGACATATATGCATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATATATATGATTCTTAAGGAATGA
Found at i:76732 original size:23 final size:23
Alignment explanation
Indices: 76706--76773 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
76696 ATTATTATAT
76706 GGCACTACGGTGCAATTCTATGC
1 GGCACTACGGTGCAATTCTATGC
* * *
76729 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTATGC
* *
76752 GGCACTTCGGTGCAATTATATG
1 GGCACTACGGTGCAATTCTATG
76774 AGCTGTGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTATGC
Found at i:80386 original size:23 final size:22
Alignment explanation
Indices: 80342--80386 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
80332 AATCTCATAG
*
80342 GGGAACCGATTCCCCCACAGGA
1 GGGAACCGATTCCCCCAAAGGA
80364 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATTCCCCC-AAAGGA
80387 AAATTGTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.29, C:0.33, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATTCCCCCAAAGGA
Found at i:81860 original size:103 final size:103
Alignment explanation
Indices: 81676--81893 Score: 382
Period size: 103 Copynumber: 2.1 Consensus size: 103
81666 GTCGAGGGTC
* *
81676 TATGTGGTCATTCGGGACACATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACACATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
* *
81741 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
*
81779 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACACATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
*
81844 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
81882 TATGTGGTCCTT
1 TATGTGGTCCTT
81894 ATGAACATTA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 109 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACACATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:81943 original size:23 final size:23
Alignment explanation
Indices: 81910--81975 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 23
81900 ATTATTATAT
*
81910 GGCACTACAGTGCAATTCTACGC
1 GGCACTACAGTGCAATTATACGC
* *
81933 GGCACTCCAGTGCAATTATACGT
1 GGCACTACAGTGCAATTATACGC
* * *
81956 GGCACTTCGGTGTAATTATA
1 GGCACTACAGTGCAATTATA
81976 TGAGCTGTGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (23 bp):
GGCACTACAGTGCAATTATACGC
Found at i:84462 original size:14 final size:12
Alignment explanation
Indices: 84425--84470 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
84415 GACTTTATCA
*
84425 TTATTAACTATG
1 TTATTAAATATG
84437 TTATTAAATATG
1 TTATTAAATATG
84449 TTATTCATAATATG
1 TTATT-A-AATATG
*
84463 TTTTTAAA
1 TTATTAAA
84471 ATATTAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 18 0.60
13 2 0.07
14 10 0.33
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (12 bp):
TTATTAAATATG
Found at i:86220 original size:13 final size:13
Alignment explanation
Indices: 86202--86226 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86192 GACTCAAACG
86202 AATTTCGAGGATT
1 AATTTCGAGGATT
86215 AATTTCGAGGAT
1 AATTTCGAGGAT
86227 GAAATTCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (13 bp):
AATTTCGAGGATT
Found at i:88382 original size:69 final size:67
Alignment explanation
Indices: 88271--88408 Score: 186
Period size: 69 Copynumber: 2.0 Consensus size: 67
88261 TAATTATAAA
* * * * *
88271 ATATTTTATTTTACTCGCTCATAGTTTTATATTACTCATTTTGGACTTTATTATCATTAACTATG
1 ATATTTTATTTTACTCACTCATAATTTTACATTACTCATTTTGGACTTTATCATCATTAACTATA
88336 TT
66 TT
* * *
88338 ATATTTTATTTTACAATCACTTATAATTTTACATTACTCGTTTTGGACTTTATCATTATTAACTA
1 ATATTTTATTTTAC--TCACTCATAATTTTACATTACTCATTTTGGACTTTATCATCATTAACTA
88403 TATT
64 TATT
88407 AT
1 AT
88409 TAAAGATGTT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 14 0.23
69 47 0.77
ACGTcount: A:0.28, C:0.13, G:0.06, T:0.53
Consensus pattern (67 bp):
ATATTTTATTTTACTCACTCATAATTTTACATTACTCATTTTGGACTTTATCATCATTAACTATA
TT
Found at i:98474 original size:24 final size:23
Alignment explanation
Indices: 98447--98510 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
98437 TTATTTTGTT
*
98447 AAAATTTTATAAA-TTTATTCTTTC
1 AAAATCTTA-AAATTTTA-TCTTTC
98471 AAAATCTTAAAATTTTATCTTTC
1 AAAATCTTAAAATTTTATCTTTC
** *
98494 TTAAT-ATAAAATTTTAT
1 AAAATCTTAAAATTTTAT
98511 ATTTATCTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
22 11 0.31
23 12 0.34
24 12 0.34
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.52
Consensus pattern (23 bp):
AAAATCTTAAAATTTTATCTTTC
Found at i:99231 original size:20 final size:20
Alignment explanation
Indices: 99137--99545 Score: 529
Period size: 20 Copynumber: 20.4 Consensus size: 20
99127 GATTTTCCAT
* ** *
99137 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
99157 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
99177 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99197 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
99217 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
99237 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99257 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
99277 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
99297 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
99317 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99337 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
99357 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99377 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
99397 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99417 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
99437 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
99457 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
99477 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
99497 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
99517 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
99537 AATCACAAC
1 AATCGCAAC
99546 ACTGAAATTT
Statistics
Matches: 343, Mismatches: 38, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 337 0.98
21 3 0.01
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:100258 original size:24 final size:24
Alignment explanation
Indices: 100219--100265 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
100209 AAATTTGGTC
100219 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
100243 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
100266 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:100457 original size:12 final size:12
Alignment explanation
Indices: 100440--100464 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100430 ATATAATCCT
100440 GAAGAAGAAAAA
1 GAAGAAGAAAAA
100452 GAAGAAGAAAAA
1 GAAGAAGAAAAA
100464 G
1 G
100465 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:102791 original size:19 final size:19
Alignment explanation
Indices: 102769--103093 Score: 396
Period size: 19 Copynumber: 18.4 Consensus size: 19
102759 CGGAAAATAC
*
102769 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
102788 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
102802 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
102822 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
102836 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
102855 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
102874 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
102888 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
102907 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
*
102925 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
102939 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
102958 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
102977 AATCGCAATACGAAATGAA
1 AATCGCAATGCGAAATGAA
102996 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
103015 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
103034 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
103048 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
103067 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
103086 AATCGCAA
1 AATCGCAA
103094 CGAGATAATC
Statistics
Matches: 267, Mismatches: 12, Indels: 54
0.80 0.04 0.16
Matches are distributed among these distances:
13 1 0.00
14 49 0.18
15 2 0.01
16 15 0.06
17 10 0.04
18 13 0.05
19 164 0.61
20 13 0.05
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:102856 original size:33 final size:34
Alignment explanation
Indices: 102769--103093 Score: 312
Period size: 33 Copynumber: 9.2 Consensus size: 34
102759 CGGAAAATAC
* *
102769 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
102802 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGATGAA
102836 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
102874 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
102907 AATCGCAATGCGAAATG-AAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
*
102939 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
*
102977 AATCGCAATACGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
103015 AATCGCAATGCGAAATGAAAATCGCAACGA--AA
1 AATCGCAATGCGAAATGAAAATCGCAACGATGAA
103047 GAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 -AATCGCAATGCGAAATGAAAATCGCAA--CG--ATGAA
103086 AATCGCAA
1 AATCGCAA
103094 CGAGATAATC
Statistics
Matches: 255, Mismatches: 12, Indels: 45
0.82 0.04 0.14
Matches are distributed among these distances:
32 21 0.08
33 92 0.36
34 31 0.12
35 11 0.04
36 4 0.02
37 12 0.05
38 82 0.32
39 2 0.01
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCGCAACGATGAA
Found at i:103131 original size:52 final size:52
Alignment explanation
Indices: 102797--103115 Score: 541
Period size: 52 Copynumber: 6.0 Consensus size: 52
102787 AAATCCCAAC
102797 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
102850 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
102902 ATGAAAATCGCAATGCGAAATG-AAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
102953 ATGAAAATCGCAATGCGAAATTAAAATCGCAATACGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGC-A-ACG--A-GAGAATCGCAATGCGAA
*
103010 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
103062 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
103114 AT
1 AT
103116 TATAAACGCA
Statistics
Matches: 253, Mismatches: 7, Indels: 13
0.93 0.03 0.05
Matches are distributed among these distances:
51 50 0.20
52 132 0.52
53 18 0.07
54 3 0.01
55 3 0.01
56 2 0.01
57 45 0.18
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:103231 original size:19 final size:19
Alignment explanation
Indices: 103122--103223 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
103112 AAATTATAAA
103122 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
103141 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
103161 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
103177 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
103194 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
103213 CGCATTGCGAT
1 CGCATTGCGAT
103224 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:103349 original size:14 final size:14
Alignment explanation
Indices: 103330--103366 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
103320 CATCAATTAC
103330 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
103344 ACAAATCATCTTTT
1 ACAAATCAACTTTT
103358 ACAAATCAA
1 ACAAATCAA
103367 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:103378 original size:12 final size:12
Alignment explanation
Indices: 103361--103433 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
103351 ATCTTTTACA
103361 AATCAATTAAAC
1 AATCAATTAAAC
*
103373 AATCAA--AAATTG
1 AATCAATTAAA--C
**
103385 AATCAACTTTTAC
1 AATCAA-TTAAAC
103398 AAATCAATTAAAC
1 A-ATCAATTAAAC
*
103411 AATCAA-AAAAC
1 AATCAATTAAAC
103422 AATCAATTAAAC
1 AATCAATTAAAC
103434 TATTGAATCA
Statistics
Matches: 46, Mismatches: 8, Indels: 14
0.68 0.12 0.21
Matches are distributed among these distances:
10 3 0.07
11 10 0.22
12 21 0.46
13 6 0.13
14 5 0.11
15 1 0.02
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.25
Consensus pattern (12 bp):
AATCAATTAAAC
Found at i:103395 original size:38 final size:38
Alignment explanation
Indices: 103347--103419 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
103337 AACTTTTACA
*
103347 AATCATCTTTTACAAATCAATTAAACAATCAAAAATTG
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
103385 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
1 AATCAACTTTTACAAATCAATTAAACAATCAAAAA
103420 ACAATCAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.29
Consensus pattern (38 bp):
AATCAACTTTTACAAATCAATTAAACAATCAAAAATTG
Found at i:105309 original size:14 final size:14
Alignment explanation
Indices: 105290--105346 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
105280 GCGAAATGAA
*
105290 AATCGCAACGACAG
1 AATCGCAACGAAAG
105304 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
105321 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
105337 AATCGCAACG
1 AATCGCAACG
105347 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:105317 original size:33 final size:33
Alignment explanation
Indices: 105271--105363 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
105261 GAGAAACCAA
*
105271 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
105304 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
105337 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
105364 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:105328 original size:19 final size:19
Alignment explanation
Indices: 105234--105368 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
105224 TAGTTTACTT
* *
105234 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
* **
105254 TCGCAACGAGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
105273 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
105292 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
105306 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
105325 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
105339 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
105358 TCGCAATGCGA
1 TCGCAACGCGA
105369 TTTTGGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 16 0.17
16 11 0.12
17 11 0.12
19 46 0.48
20 11 0.12
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:105380 original size:19 final size:19
Alignment explanation
Indices: 105364--105492 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
105354 AAAATCGCAA
105364 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
105383 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
105397 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
105416 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
105430 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
105449 TGCGATTTTGGTTTCGCAT
1 TGCGATTTTGGTTTCGCGT
* *
105468 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
105488 TGCGA
1 TGCGA
105493 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 22 0.25
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 47 0.53
20 12 0.14
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:105406 original size:33 final size:33
Alignment explanation
Indices: 105364--105455 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
105354 AAAATCGCAA
105364 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
105397 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
105430 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
105456 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:105824 original size:92 final size:93
Alignment explanation
Indices: 105535--105913 Score: 744
Period size: 93 Copynumber: 4.1 Consensus size: 93
105525 TTGAATGGAT
105535 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
105599 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
105627 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
105692 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
105720 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
105784 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
105812 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
105877 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
105905 AAATTTACT
1 AAATTTACT
105914 AAGCAATCTA
Statistics
Matches: 285, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
92 115 0.40
93 170 0.60
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:105847 original size:185 final size:185
Alignment explanation
Indices: 105535--105913 Score: 742
Period size: 185 Copynumber: 2.0 Consensus size: 185
105525 TTGAATGGAT
105535 AAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACA
1 AAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACA
105600 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
66 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
105665 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
105720 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
105784 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
65 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
105849 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
130 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
105905 AAATTTACT
1 AAATTTACT
105914 AAGCAATCTA
Statistics
Matches: 193, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
185 178 0.92
186 15 0.08
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACA
GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:107635 original size:14 final size:14
Alignment explanation
Indices: 107616--107705 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
107606 TTGAAATGAA
107616 AATCGCAACGAGAG
1 AATCGCAACGAGAG
107630 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
107647 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
107663 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
107682 AATCGCAACGAGAG
1 AATCGCAACGAGAG
107696 AATCGCAACG
1 AATCGCAACG
107706 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:107653 original size:33 final size:33
Alignment explanation
Indices: 107608--107722 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
107598 TCTTTTGGTT
107608 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
107641 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
107674 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
107707 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
107723 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:107654 original size:19 final size:18
Alignment explanation
Indices: 107615--107727 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
107605 GTTGAAATGA
107615 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
107630 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
107647 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
107663 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
107680 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
107696 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
107713 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
107728 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:107758 original size:14 final size:14
Alignment explanation
Indices: 107739--107793 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
107729 TTTGGTTTCG
107739 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
107753 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
107772 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
107786 CGTTGCGA
1 CGTTGCGA
107794 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:107771 original size:33 final size:33
Alignment explanation
Indices: 107723--107793 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
107713 AAAATCGCAA
**
107723 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
107756 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
107789 TGCGA
1 TGCGA
107794 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:107801 original size:33 final size:33
Alignment explanation
Indices: 107734--107815 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
107724 GCGATTTTGG
***
107734 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
107767 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
107800 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
107816 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:107820 original size:20 final size:20
Alignment explanation
Indices: 107746--107834 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
107736 TCGCGTTGCG
107746 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
107766 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
107779 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
107799 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
107819 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
107835 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:107956 original size:33 final size:33
Alignment explanation
Indices: 107914--107984 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
107904 AATACTAACT
*
107914 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
107947 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
107980 TGAAA
1 TGAAA
107985 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:108218 original size:22 final size:22
Alignment explanation
Indices: 108166--108220 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
108156 TGGTTGTGAG
**
108166 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
108188 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
108210 GGATTTCTTCG
1 GGATTTCTTCG
108221 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:108391 original size:20 final size:20
Alignment explanation
Indices: 108366--108559 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
108356 CTTTAAATAT
108366 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
108386 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
108408 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
108427 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
108447 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
108467 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
108487 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
108507 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
108527 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
108547 CGCGTTGCGATTT
1 CGCGTTGCGATTT
108560 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:108553 original size:60 final size:60
Alignment explanation
Indices: 108366--108559 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
108356 CTTTAAATAT
**
108366 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
108427 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
108487 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
108547 CGCGTTGCGATTT
1 CGCGTTGCGATTT
108560 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:108576 original size:21 final size:20
Alignment explanation
Indices: 108552--108628 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
108542 ATATTCGCGT
108552 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
108573 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
108593 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
108615 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
108629 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:108639 original size:20 final size:20
Alignment explanation
Indices: 108614--108665 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
108604 AAGAATCGCG
*
108614 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
108634 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
108654 TTGCGATTCTGG
1 TTGCGATTCTGG
108666 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:110112 original size:16 final size:16
Alignment explanation
Indices: 110091--110126 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
110081 TTAAAATATT
110091 TAAATATTTTAAAAAA
1 TAAATATTTTAAAAAA
*
110107 TAAATATTTTGAAAAA
1 TAAATATTTTAAAAAA
110123 TAAA
1 TAAA
110127 CAAAATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
TAAATATTTTAAAAAA
Found at i:110764 original size:100 final size:99
Alignment explanation
Indices: 110562--110771 Score: 375
Period size: 100 Copynumber: 2.1 Consensus size: 99
110552 ATATAGTTAA
* *
110562 AACTTATTTATAGAAGTGTTCAAATGTTAAAAATATTTTTAATGTATTATTTTTTTAATAATTTT
1 AACTTATTAATAGAAGTGTTCAAATGTTAAAAATATTTTCAATGTATTATTTTTTTAATAATTTT
*
110627 GAATTTATTATTTTATATATTTGTATATTTCTTT
66 GAATTTATTATTTTATACATTTGTATATTTCTTT
*
110661 AACTTATTAATAGAAGTGTTCAAATGTTAAAAATATTTTCAATGTTTTATTTTTTTTAATAATTT
1 AACTTATTAATAGAAGTGTTCAAATGTTAAAAATATTTTCAATGTATTA-TTTTTTTAATAATTT
110726 TGAATTTATTATTTTATACATTTGTATATTTCTTT
65 TGAATTTATTATTTTATACATTTGTATATTTCTTT
110761 AACTTATTAAT
1 AACTTATTAAT
110772 TTTGTCTAAC
Statistics
Matches: 106, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
99 46 0.43
100 60 0.57
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (99 bp):
AACTTATTAATAGAAGTGTTCAAATGTTAAAAATATTTTCAATGTATTATTTTTTTAATAATTTT
GAATTTATTATTTTATACATTTGTATATTTCTTT
Found at i:110859 original size:24 final size:24
Alignment explanation
Indices: 110801--110865 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
110791 AAATTATCAG
* * *
110801 TATTTTTATTTTTAATATCTTTTTA
1 TATTTTAAGTTTTAA-ATATTTTTA
*
110826 -ATATTCAAGTTTTAAATATTTTTA
1 TAT-TTTAAGTTTTAAATATTTTTA
110850 TATTTTAAGTTTTAAA
1 TATTTTAAGTTTTAAA
110866 CTATGCTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
24 22 0.67
25 11 0.33
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (24 bp):
TATTTTAAGTTTTAAATATTTTTA
Found at i:111709 original size:28 final size:28
Alignment explanation
Indices: 111668--111730 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
111658 GATTAAAAAT
111668 AAAATAAATTAAGAATCAGCCTCTGACCC
1 AAAA-AAATTAAGAATCAGCCTCTGACCC
*
111697 AAAAAAATTAAGAATCAGCCTCTGACCT
1 AAAAAAATTAAGAATCAGCCTCTGACCC
111725 AAAAAA
1 AAAAAA
111731 TCAATAACCG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 29 0.88
29 4 0.12
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.19
Consensus pattern (28 bp):
AAAAAAATTAAGAATCAGCCTCTGACCC
Found at i:114414 original size:26 final size:26
Alignment explanation
Indices: 114384--114459 Score: 136
Period size: 26 Copynumber: 3.0 Consensus size: 26
114374 GGATTTACTT
114384 GTCAATTAAATTATACTTTCATTTTA
1 GTCAATTAAATTATACTTTCATTTTA
114410 GTCAATTAAATTATACTTTCATTTTA
1 GTCAATTAAATTATACTTTCATTTTA
*
114436 GTCAATTAAACTATACTTTC-TTTT
1 GTCAATTAAATTATACTTTCATTTT
114460 GTAAAATCTG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 4 0.08
26 45 0.92
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (26 bp):
GTCAATTAAATTATACTTTCATTTTA
Found at i:117079 original size:51 final size:52
Alignment explanation
Indices: 117005--117133 Score: 188
Period size: 52 Copynumber: 2.5 Consensus size: 52
116995 TAATAGGATG
* * * *
117005 GGGACGTTACCCTTCGAAGAGGAACC-CAAACATAAAACAGAAATCATGATA
1 GGGACGTTACCCTTCGAAGAGGAACCAAAAAAAAAAAACAAAAATCATGATA
* *
117056 GGGACGTTACCCATCGAAAAGGAACCAAAAAAAAAAAACAAAAATCATGATA
1 GGGACGTTACCCTTCGAAGAGGAACCAAAAAAAAAAAACAAAAATCATGATA
*
117108 GGGACGTTACCCTTCGAGGAGGAACC
1 GGGACGTTACCCTTCGAAGAGGAACC
117134 TGAGACTTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
51 24 0.35
52 44 0.65
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.14
Consensus pattern (52 bp):
GGGACGTTACCCTTCGAAGAGGAACCAAAAAAAAAAAACAAAAATCATGATA
Found at i:119453 original size:24 final size:24
Alignment explanation
Indices: 119421--119470 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
119411 TGGTAGTTGA
*
119421 TTTAATGGT-TGTTTAAACTTTATT
1 TTTAATGGTATATTT-AACTTTATT
*
119445 TTTAATGGTATATTTAAGTTTATT
1 TTTAATGGTATATTTAACTTTATT
119469 TT
1 TT
119471 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTAATGGTATATTTAACTTTATT
Found at i:120389 original size:17 final size:17
Alignment explanation
Indices: 120355--120387 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
120345 TTTTGCCAGA
120355 GCATTTTATTTTGTTTT
1 GCATTTTATTTTGTTTT
*
120372 GCATTTT-TTTTATTTT
1 GCATTTTATTTTGTTTT
120388 TGTATAGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.73
Consensus pattern (17 bp):
GCATTTTATTTTGTTTT
Found at i:128386 original size:24 final size:24
Alignment explanation
Indices: 128357--128406 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
128347 TGGTGGTTGA
*
128357 TTTAATGGT-TGTTTAAACTTTATT
1 TTTAATGGTATATTT-AACTTTATT
*
128381 TTTAATGGTATATTTAAGTTTATT
1 TTTAATGGTATATTTAACTTTATT
128405 TT
1 TT
128407 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTAATGGTATATTTAACTTTATT
Found at i:128865 original size:17 final size:16
Alignment explanation
Indices: 128834--128867 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
128824 TATGTGAGGA
128834 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
128850 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
128867 T
1 T
128868 ACTGTCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Done.