genome.fa.s2377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002377.1 Hibiscus syriacus cultivar Beakdansim tig00004858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64668

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496--586	20	4.6	20	86	5	71	36	27	19	16	1.93
514--857	20	17.5	20	83	7	402	34	26	18	20	1.96
514--857	116	2.9	117	84	6	410	34	26	18	20	1.96
1534--1580	24	2.0	24	87	8	69	25	14	21	38	1.92
4026--4298	19	15.4	19	81	15	345	46	18	20	14	1.83
4026--4320	33	8.4	36	83	12	297	46	18	20	14	1.84
4026--4336	160	2.0	156	91	5	500	45	18	20	15	1.85
4054--4320	52	5.0	52	90	5	428	46	17	21	14	1.84
4327--4428	19	5.6	19	85	12	151	14	23	17	44	1.86
4534--4570	14	2.6	14	91	0	65	45	21	0	32	1.52
6505--6561	14	3.7	14	77	20	60	45	22	21	10	1.82
6486--6577	33	2.8	33	93	1	159	46	21	20	10	1.81
6449--6582	19	7.6	19	77	16	119	45	23	19	11	1.82
6578--6654	19	4.3	19	76	17	83	9	15	29	45	1.77
6697--7164	93	5.1	93	95	3	867	46	18	12	22	1.83
6697--7164	184	2.6	182	98	0	891	46	18	12	22	1.83
8861--8950	14	5.7	14	74	23	72	42	23	24	10	1.84
8853--8967	33	3.5	33	93	0	203	45	20	23	10	1.82
8860--8972	19	6.8	18	72	23	88	43	22	23	10	1.84
8983--9039	14	3.7	14	75	20	60	8	24	22	43	1.81
8997--9085	19	4.9	19	72	15	89	11	23	20	44	1.83
8978--9085	33	3.1	33	92	8	162	10	24	20	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9177--9247	33	2.2	33	89	0	106	49	18	21	11	1.78
9429--9483	22	2.5	22	81	0	74	20	16	40	23	1.91
9628--9820	20	9.6	20	82	5	219	19	19	25	35	1.95
9628--9820	60	3.2	60	83	0	251	19	19	25	35	1.95
9876--9927	20	2.6	20	96	0	95	21	13	26	38	1.90
10454--10508	23	2.5	22	88	5	76	52	9	16	21	1.71
10466--10535	37	1.9	36	85	8	97	58	10	11	20	1.61
10466--10545	38	2.2	36	82	8	90	60	8	10	21	1.56
19218--19291	33	2.2	34	97	2	141	39	10	0	50	1.38
20062--20164	52	2.0	52	96	0	188	41	12	23	22	1.88
24647--24749	52	2.0	52	96	0	188	41	12	23	22	1.88
27019--27110	3	30.7	3	95	0	157	33	3	0	63	1.11
27106--27137	11	2.8	11	95	4	55	56	0	0	43	0.99
28584--28630	14	3.5	13	80	13	51	40	2	2	55	1.24
30993--31032	20	2.0	21	90	5	64	25	30	27	17	1.97
31012--31164	68	2.2	68	85	4	193	25	27	28	18	1.98
31467--31538	29	2.5	29	90	0	108	37	11	12	38	1.79
31552--31611	30	2.0	31	90	3	95	36	6	23	33	1.81
31831--31897	22	3.0	22	100	0	134	19	26	26	26	1.99
37940--37982	21	2.0	21	90	0	68	27	27	27	16	1.97
37962--38113	68	2.2	68	86	3	200	25	27	27	19	1.98
38416--38487	29	2.5	29	90	0	108	37	11	12	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38502--38561	30	2.0	31	90	3	95	36	6	23	33	1.81
38781--38825	22	2.0	22	100	0	90	20	26	26	26	1.99
38781--38833	22	2.4	22	93	0	79	20	24	24	30	1.99
51034--51505	84	5.6	84	98	0	908	28	14	22	35	1.93
52253--52689	113	3.9	113	94	1	743	37	13	19	29	1.90
53008--53093	3	28.7	3	95	0	145	33	3	0	62	1.12
53089--53120	11	2.8	11	95	4	55	56	0	0	43	0.99
54560--54606	14	3.5	13	80	13	51	40	2	2	55	1.24
55460--55499	21	1.9	21	100	0	80	45	7	25	22	1.78
55478--55523	15	3.1	15	78	6	58	45	8	15	30	1.76
55681--55779	49	2.0	50	80	9	114	47	2	0	50	1.12
55864--55911	23	2.2	20	78	10	51	39	2	2	56	1.23
56031--56074	22	2.0	23	86	4	63	54	0	0	45	0.99
56266--56380	42	2.8	42	81	6	153	47	19	14	18	1.82

Tables:   1

The End!