genome.fa.s2378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002378.1 Hibiscus syriacus cultivar Beakdansim tig00004861_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61137

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566--619	21	2.5	22	82	5	67	44	3	0	51	1.19
8046--8106	23	2.6	23	80	12	70	60	1	1	36	1.16
14921--14959	3	13.7	3	84	10	55	64	0	0	35	0.94
15352--15432	42	1.9	42	87	5	119	32	23	19	24	1.98
15590--15647	20	2.8	21	74	7	57	27	20	18	32	1.97
15613--15696	42	2.0	42	83	4	107	30	23	19	26	1.98
15252--16035	264	3.0	262	86	1	1079	30	20	19	29	1.97
15955--16213	112	2.3	113	88	7	372	33	20	13	32	1.91
18164--18220	4	14.8	4	77	14	57	1	21	0	77	0.86
18159--18240	32	2.8	29	81	13	89	2	17	1	79	0.91
18164--18220	24	2.4	24	80	13	73	1	21	0	77	0.86
18171--18247	9	8.6	9	78	17	54	2	16	1	79	0.92
18171--18234	9	7.4	8	77	20	58	1	17	1	79	0.89
18211--18285	20	3.5	21	80	8	80	8	12	4	76	1.15
18211--18285	22	3.5	21	78	8	71	8	12	4	76	1.15
18201--18266	29	2.3	28	82	10	80	6	10	3	80	1.00
21507--21800	147	2.0	147	95	0	534	18	20	15	45	1.85
22601--22639	20	2.1	19	86	13	55	58	7	15	17	1.59
22832--23124	149	2.0	149	84	0	379	20	24	18	36	1.95
25083--25128	22	2.1	21	88	4	65	56	13	10	19	1.66
25078--25132	22	2.6	21	73	18	60	58	10	9	21	1.60
25283--25308	13	2.0	13	100	0	52	38	23	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32531--32566	18	2.0	18	100	0	72	38	27	22	11	1.88
34824--34861	16	2.4	16	90	0	58	44	18	13	23	1.85
34611--35055	229	1.9	229	93	0	755	38	8	11	41	1.72
35436--35512	25	3.2	24	78	12	77	50	2	3	42	1.34
35633--35671	20	2.0	20	84	0	51	43	0	5	51	1.24
39898--39926	14	2.0	15	93	6	51	37	0	0	62	0.96
45572--45605	12	2.7	12	90	9	50	29	0	32	38	1.58
45734--45773	20	2.0	21	95	5	73	35	0	22	42	1.54
46880--46967	17	5.1	17	75	8	79	65	6	18	9	1.42
46880--46967	18	5.1	17	75	13	74	65	6	18	9	1.42
46913--46992	18	4.4	18	78	12	76	65	7	17	10	1.46
46880--46991	54	2.1	52	83	9	138	65	7	17	9	1.45
55237--55287	15	3.4	15	76	10	59	5	21	37	35	1.78
58182--58304	63	1.9	64	95	4	223	34	15	24	26	1.95

Tables:   1

The End!