genome.fa.s2379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002379.1 Hibiscus syriacus cultivar Beakdansim tig00004863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75272

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3647--3852	75	2.7	76	86	3	265	21	23	32	22	1.98
4891--4920	16	1.9	16	93	6	53	53	3	0	43	1.17
6353--6377	3	8.3	3	100	0	50	68	0	32	0	0.90
7203--7242	15	2.6	16	84	8	55	72	2	7	17	1.19
13444--13513	21	3.3	21	72	18	56	31	20	21	27	1.98
13548--13796	20	12.4	20	82	7	238	36	22	19	20	1.95
13548--13799	40	6.3	40	87	4	339	37	22	19	20	1.94
13507--13799	118	2.4	120	85	5	380	37	23	19	20	1.94
13525--13802	20	13.9	19	73	12	161	36	23	19	21	1.95
14426--14509	33	2.5	32	84	7	105	15	22	17	44	1.87
16029--16119	42	2.2	42	80	4	103	23	17	38	20	1.93
16601--16648	20	2.4	20	85	0	69	35	25	18	20	1.95
16682--16725	19	2.3	19	84	7	54	15	18	22	43	1.88
16697--16788	33	2.8	33	82	6	109	13	18	20	47	1.81
16876--17243	94	4.1	93	89	5	524	46	18	12	22	1.83
17087--17243	82	1.9	82	90	2	253	43	15	14	26	1.85
18937--18992	20	2.8	20	84	10	87	39	21	25	14	1.91
19044--19135	40	2.3	40	85	7	116	13	18	19	48	1.80
19048--19138	20	4.6	20	81	9	105	13	16	19	50	1.77
19696--19868	20	8.6	20	77	5	177	19	18	24	36	1.94
19698--19868	40	4.2	41	90	1	247	19	18	24	37	1.94
19712--19910	81	2.5	80	83	4	195	21	17	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19877--19929	20	2.7	20	87	0	70	16	15	20	47	1.83
22638--22817	90	2.0	90	94	0	315	33	16	29	20	1.94
28309--28363	27	1.9	29	89	10	87	50	3	0	45	1.19
32562--32603	18	2.3	18	100	0	84	38	16	21	23	1.93
36855--36909	25	2.2	25	90	6	85	52	12	10	23	1.71
37827--37870	20	2.2	20	91	0	70	40	15	18	25	1.90
38560--38611	25	2.1	25	82	7	61	57	5	1	34	1.33
40135--40239	44	2.4	45	98	1	203	31	13	14	40	1.84
43975--44002	3	9.3	3	100	0	56	64	0	0	35	0.94
45201--45237	2	18.5	2	100	0	74	51	0	0	48	1.00
58295--58349	2	27.5	2	100	0	110	49	0	0	50	1.00
64052--64315	111	2.4	111	88	1	406	35	13	11	39	1.81

Tables:   1

The End!