genome.fa.s2380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002380.1 Hibiscus syriacus cultivar Beakdansim tig00004865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87059

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2722--2788	20	3.3	20	75	8	73	28	25	20	25	1.99
2935--2961	14	1.9	14	100	0	54	33	37	0	29	1.58
3114--3158	20	2.2	20	88	0	63	15	15	26	42	1.87
4844--4918	21	3.7	21	67	19	52	16	12	40	32	1.84
6616--6679	22	3.0	21	80	6	76	23	17	39	20	1.92
6876--6912	19	1.9	19	88	0	56	29	10	21	37	1.88
7166--7202	19	1.9	19	88	0	56	29	10	21	37	1.88
9684--9736	26	2.0	26	100	0	106	54	22	22	0	1.45
9804--9860	30	1.9	30	100	0	114	24	21	19	35	1.96
11660--11747	44	2.0	44	97	0	167	38	10	20	30	1.86
12308--12363	23	2.5	22	77	5	58	35	3	7	53	1.46
15685--15710	11	2.4	11	100	0	52	26	0	0	73	0.84
35926--35984	31	1.9	31	92	0	100	40	6	10	42	1.65
36009--36051	22	2.0	22	100	0	86	51	9	0	39	1.34
36011--36059	22	2.2	22	88	3	71	55	10	0	34	1.34
36112--36191	14	5.0	16	63	22	51	53	11	1	33	1.44
36111--36485	32	13.4	32	70	25	248	53	13	0	33	1.43
36175--36296	22	5.0	22	73	19	100	52	15	0	31	1.43
36229--36305	22	3.4	22	66	20	59	55	16	0	27	1.41
36197--36440	112	2.2	111	94	3	429	53	15	0	31	1.42
36342--36416	22	3.2	23	75	17	82	54	17	0	28	1.43
36259--36485	54	4.1	54	80	18	288	53	13	0	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36014--36466	245	1.8	244	86	8	661	52	14	0	32	1.43
36420--36462	22	2.0	22	100	0	86	51	13	0	34	1.42
36422--36470	22	2.2	22	88	3	71	55	14	0	30	1.40
36465--36553	15	6.5	15	79	18	113	55	0	0	44	0.99
36465--36553	24	3.2	29	78	18	118	55	0	0	44	0.99
36465--36540	39	2.0	38	94	2	134	55	0	0	44	0.99
39448--39480	16	2.1	16	94	0	57	57	0	0	42	0.98
40580--40645	6	10.7	6	96	3	114	16	31	15	36	1.90
42177--42244	21	3.1	21	78	4	73	22	23	19	35	1.96
42221--42299	26	3.0	26	96	0	140	16	17	22	43	1.88
43199--43288	21	4.6	21	76	18	104	32	27	20	20	1.97
43941--43971	14	2.1	15	94	5	55	77	3	0	19	0.90
44087--44139	2	26.5	2	92	0	88	3	47	0	49	1.19
46484--46614	68	1.9	69	81	4	158	32	10	15	41	1.81
49307--49333	11	2.5	11	100	0	54	74	7	0	18	1.05
53067--53164	3	32.7	3	95	0	169	63	0	3	33	1.10
53479--54031	113	4.9	113	92	1	871	28	20	13	37	1.90
54670--55160	83	5.9	83	98	0	930	37	22	13	26	1.91
67603--67648	25	2.0	24	83	12	60	56	0	0	43	0.99
69120--69208	3	29.7	3	95	0	133	60	0	5	33	1.20
69634--69690	27	2.1	27	100	0	114	26	14	10	49	1.75
74499--74528	11	2.7	11	100	0	60	70	10	10	10	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75877--75920	23	1.9	23	90	0	70	52	20	11	15	1.74
75870--75928	23	2.6	23	75	0	64	45	18	13	22	1.84
80717--80956	76	3.1	76	83	6	288	43	12	13	30	1.81
80972--81208	76	3.1	75	81	2	267	41	12	13	32	1.82
80705--81559	252	3.4	250	84	3	1083	42	12	12	32	1.81
81051--81372	175	1.8	176	86	5	465	42	11	12	33	1.79
81225--81460	76	3.1	76	85	3	296	42	10	13	33	1.78
82191--82495	108	2.8	108	84	4	357	36	14	10	39	1.79

Tables:   1

The End!