genome.fa.s2383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002383.1 Hibiscus syriacus cultivar Beakdansim tig00004874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75453

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5026--5090	30	2.2	30	82	0	85	32	23	7	36	1.83
6225--6346	11	10.5	11	72	10	82	26	24	18	30	1.98
6215--6287	24	3.0	24	80	13	96	30	27	19	23	1.98
6293--6346	23	2.3	23	93	0	90	27	22	18	31	1.97
6270--6337	12	5.8	12	77	8	68	25	20	19	35	1.96
7781--7829	21	2.3	21	86	13	66	30	2	24	42	1.66
7823--7862	21	1.9	21	89	0	62	15	5	32	47	1.66
8385--8425	12	3.2	13	77	22	50	39	0	9	51	1.35
9332--9642	138	2.3	136	91	3	493	34	10	13	42	1.78
9459--9523	29	2.2	30	91	2	105	32	7	12	47	1.69
9489--9740	106	2.3	110	89	4	379	32	12	14	40	1.83
9706--9768	29	2.2	29	94	2	110	33	9	11	46	1.72
9846--9885	20	2.0	20	85	0	53	45	2	2	50	1.28
10305--10374	28	2.4	29	83	9	81	34	7	25	32	1.83
15073--15222	45	3.3	45	91	0	237	33	24	17	24	1.96
16933--17014	28	2.9	28	100	0	164	21	7	24	46	1.77
20855--20879	6	4.2	6	100	0	50	68	0	16	16	1.22
25677--25723	18	2.8	17	80	6	60	31	6	29	31	1.83
25808--25851	5	9.0	5	87	5	63	15	0	4	79	0.89
26426--26491	28	2.4	28	94	0	123	42	34	9	13	1.76
26418--26497	28	2.6	32	76	19	105	41	37	10	11	1.74
26212--26533	157	2.1	155	80	11	345	33	31	11	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33557--33581	2	12.5	2	100	0	50	52	0	0	48	1.00
44649--44696	24	2.0	24	100	0	96	29	29	8	33	1.86
45039--45097	29	2.2	26	76	21	68	25	11	8	54	1.65
45195--45257	23	3.0	20	76	15	72	25	6	15	52	1.66
45685--45716	14	2.2	15	94	5	57	15	0	15	68	1.21
45691--45733	14	3.1	14	83	9	52	16	0	13	69	1.19
62427--62466	15	2.7	15	76	0	53	35	0	30	35	1.58
62536--63629	122	8.8	126	89	5	1636	23	25	19	31	1.98
62543--63625	242	4.4	249	88	5	1602	23	25	19	31	1.98
63721--63774	22	2.4	23	81	9	58	46	0	20	33	1.51
64025--64122	33	3.0	34	82	5	121	38	0	4	57	1.18
64626--64694	20	3.5	21	77	16	67	23	28	28	18	1.98
64698--64748	21	2.4	21	83	0	66	25	11	37	25	1.90
66420--66491	30	2.3	32	76	11	78	58	1	0	40	1.07
66417--66493	33	2.4	30	82	8	91	59	1	0	38	1.06
66923--66947	5	5.0	5	100	0	50	20	0	20	60	1.37

Tables:   1

The End!