genome.fa.s2384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002384.1 Hibiscus syriacus cultivar Beakdansim tig00004875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72106

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11985--12123	35	3.9	34	85	3	170	20	23	19	36	1.95
11985--12128	71	2.0	71	91	0	234	19	23	18	38	1.93
12124--12163	21	1.9	21	85	10	55	7	30	0	62	1.23
18341--19321	149	6.9	138	83	8	976	23	21	34	20	1.96
18341--19322	286	3.4	280	82	8	1103	23	21	34	20	1.96
18341--19328	435	2.3	433	84	4	1224	23	21	34	20	1.97
23288--23329	18	2.3	18	84	8	50	26	2	19	52	1.58
23294--23329	18	1.9	18	88	5	54	27	2	16	52	1.57
23389--23431	5	8.4	5	80	14	52	25	0	2	72	0.97
23886--23967	40	2.0	40	97	0	155	53	7	10	28	1.62
26747--26779	17	1.9	17	93	0	57	36	0	12	51	1.39
28065--28104	19	2.1	19	85	0	53	37	5	17	40	1.72
31095--31147	21	2.5	21	81	0	70	20	22	18	37	1.94
31137--31310	40	4.3	40	84	3	199	40	20	18	20	1.92
31137--31310	60	2.9	60	84	5	208	40	20	18	20	1.92
31137--31290	20	7.7	20	85	1	218	39	20	19	20	1.93
31277--31343	20	3.3	20	83	8	75	35	26	16	20	1.94
34356--34463	20	5.5	19	83	5	117	38	24	21	15	1.92
34534--34587	14	3.5	14	73	22	54	11	24	20	44	1.83
34512--34596	33	2.5	33	94	1	143	12	23	18	44	1.85
34713--34749	14	2.6	14	86	0	56	48	21	0	29	1.50
36122--36213	42	2.2	42	82	3	105	21	17	35	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36133--36240	42	2.6	42	77	5	103	22	16	37	23	1.93
36724--36830	20	5.3	20	93	0	151	37	20	18	23	1.94
36878--36935	20	2.9	20	86	0	80	24	18	20	36	1.95
36982--37033	20	2.6	20	90	0	86	19	17	23	40	1.91
38903--39013	20	5.6	20	85	1	89	42	23	17	17	1.89
39350--39415	22	3.0	22	84	0	87	22	15	36	25	1.93
39611--39683	20	3.7	20	96	0	128	20	20	21	36	1.95
44274--44320	18	2.6	18	79	0	58	21	48	17	12	1.79
44297--44339	13	3.3	13	93	0	68	20	44	18	16	1.87
46787--46873	24	3.7	23	84	3	111	19	13	17	49	1.79
46787--46878	12	7.8	12	71	20	59	18	14	17	50	1.79
46790--46880	47	1.9	48	88	6	141	18	14	16	50	1.78
49774--50088	31	10.2	31	95	0	567	33	15	11	39	1.83
49923--50006	15	5.5	15	64	25	50	32	14	13	40	1.84
50598--50774	64	2.8	64	84	5	223	26	19	22	31	1.98
50661--50822	64	2.5	63	86	5	202	25	22	20	30	1.98
53571--53631	23	2.7	23	86	0	86	24	27	27	19	1.99
53647--53967	103	3.1	103	99	0	633	36	23	13	25	1.92
55415--55459	21	2.1	21	91	0	72	15	22	28	33	1.95
56982--57018	3	13.0	3	83	11	51	67	2	0	29	1.04
59823--59880	29	1.9	31	83	13	77	48	5	27	18	1.70
61244--61526	107	2.6	108	86	2	379	40	11	12	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62279--62322	20	2.2	20	87	0	61	40	2	18	38	1.63
66159--66314	63	2.5	63	80	5	163	33	19	19	27	1.96
66769--67083	149	2.1	149	95	1	560	26	17	20	34	1.95
69766--69804	19	2.1	19	95	0	69	20	38	15	25	1.92
69703--69912	65	3.2	64	78	8	212	30	24	16	28	1.97
69703--69932	64	3.6	64	78	6	216	29	25	17	27	1.97

Tables:   1

The End!