genome.fa.s2385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002385.1 Hibiscus syriacus cultivar Beakdansim tig00004881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90343

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3133--3530	46	8.6	46	81	5	383	32	16	10	40	1.83
3134--3541	138	3.0	137	84	2	507	32	16	10	40	1.82
11226--11289	26	2.7	23	81	15	69	70	1	1	26	1.05
11240--11283	13	3.4	13	87	9	63	72	0	0	27	0.85
11467--11500	2	17.5	2	93	6	61	50	0	0	50	1.00
11567--11597	2	15.5	2	93	0	53	51	3	0	45	1.17
12507--12884	83	4.6	82	81	5	329	23	20	23	32	1.98
13060--13795	103	7.0	106	89	3	1107	22	18	23	35	1.96
13061--13795	209	3.5	210	88	3	1092	22	18	23	35	1.96
14303--14339	18	2.0	19	89	5	58	45	32	2	18	1.64
14734--14778	22	2.0	22	95	0	81	22	11	28	37	1.88
15172--15516	172	2.0	172	98	0	663	24	17	20	37	1.94
15552--15613	7	8.7	7	77	15	56	1	14	4	79	0.98
15574--15610	19	1.9	19	88	0	56	0	18	5	75	0.99
20207--20262	13	4.4	13	80	10	62	71	0	1	26	0.96
20209--20287	26	3.2	26	71	12	76	67	0	3	29	1.08
20229--20339	21	5.3	22	69	21	69	65	2	2	28	1.20
20272--20315	16	2.8	16	77	16	56	68	4	0	27	1.09
20459--20483	2	12.5	2	100	0	50	52	0	0	48	1.00
20515--20582	4	16.5	4	74	17	50	67	1	0	30	0.99
20513--20561	11	4.2	11	80	14	53	73	0	0	26	0.83
23379--23460	21	3.5	22	79	17	85	45	2	8	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23402--23540	26	5.4	28	75	16	122	46	2	6	45	1.41
23375--23540	76	2.2	77	84	10	218	46	2	6	45	1.41
23402--23535	50	2.6	53	81	13	163	46	1	6	45	1.38
23378--23508	21	5.6	23	71	18	67	47	2	6	43	1.42
25675--25718	23	1.9	23	85	0	61	45	13	25	15	1.83
25683--25732	22	2.2	23	85	3	66	40	12	32	16	1.84
33870--33909	14	2.9	14	96	0	71	10	32	0	57	1.32
34628--34678	21	2.5	21	87	9	70	21	17	23	37	1.94
41030--41077	4	12.0	4	100	0	96	75	0	0	25	0.81
45007--45061	25	2.2	26	87	9	78	76	3	10	9	1.13
45551--45627	38	2.0	38	100	0	154	38	15	11	33	1.84
48322--48360	8	4.9	8	90	0	60	0	33	0	66	0.92
52206--52355	2	75.0	2	75	12	112	44	2	6	47	1.41
52512--52554	13	3.3	13	83	0	59	37	11	20	30	1.89
52519--52563	13	3.5	13	84	0	54	35	13	20	31	1.91
58318--58356	21	1.9	20	84	5	51	28	12	23	35	1.91
65427--65504	24	3.1	24	71	16	77	24	23	16	35	1.95
66997--67039	19	2.3	19	87	0	59	44	2	27	25	1.66
68878--69021	22	6.3	22	80	10	155	45	2	7	44	1.44
68893--69029	47	3.0	46	81	13	156	44	2	7	45	1.43
68950--69053	47	2.2	45	80	12	120	44	3	5	46	1.45
69101--69134	7	4.7	7	85	7	50	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70600--70636	18	2.1	18	100	0	74	45	21	16	16	1.84
74736--74776	22	1.9	21	90	5	64	34	36	2	26	1.70
74799--74838	21	1.9	21	90	10	64	20	15	0	65	1.28
75108--75168	32	2.0	30	87	12	88	75	3	13	8	1.15
75090--75154	18	3.5	17	75	22	60	78	1	13	6	1.01
75093--75153	19	3.1	19	72	22	54	77	1	14	6	1.05
79209--79271	8	6.8	9	76	21	51	79	1	15	3	0.94
79212--79266	10	5.2	11	78	4	51	78	1	16	3	0.98
82967--83016	23	2.1	24	96	3	93	36	36	0	28	1.58
83056--83099	21	2.0	21	86	4	61	22	22	0	54	1.45
87098--87138	22	1.9	21	90	5	64	34	36	2	26	1.70
87656--87978	172	1.9	172	93	2	558	34	11	25	29	1.91
89872--89913	21	2.1	20	86	8	59	35	16	19	28	1.93

Tables:   1

The End!