Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002386.1 Hibiscus syriacus cultivar Beakdansim tig00004884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101998

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5765--5931
83
2.0
84
91
3
275
32
9
26
31
1.88
6471--6566
48
2.0
49
93
2
167
29
11
31
28
1.92
6910--6943
2
17.0
2
100
0
68
50
0
0
50
1.00
9171--9208
2
19.0
2
100
0
76
50
0
0
50
1.00
10760--11674
76
12.3
75
92
4
1406
35
21
19
23
1.96
10760--11674
151
6.2
151
92
4
1478
35
21
19
23
1.96
10760--11678
227
4.1
228
92
5
1492
35
21
19
23
1.96
12766--12921
54
2.9
54
90
1
233
21
26
16
36
1.93
19262--19307
21
2.2
21
84
7
58
58
4
15
21
1.54
22401--22430
2
15.0
2
100
0
60
50
0
0
50
1.00
23818--23865
3
15.7
3
83
12
62
62
0
0
37
0.95
23815--23854
19
2.1
19
95
0
71
60
0
0
40
0.97
27421--27462
22
1.9
22
85
9
59
50
4
0
45
1.23
31355--31450
6
15.3
6
79
20
92
40
0
0
59
0.97
31355--31448
14
6.4
14
83
16
104
40
0
0
59
0.97
31354--31450
12
7.7
13
84
15
125
41
0
0
58
0.98
31375--31436
2
34.5
2
79
20
75
43
0
0
56
0.99
32825--32877
23
2.2
23
83
10
61
43
3
0
52
1.19
33535--33581
17
2.5
20
83
16
64
27
2
2
68
1.13
36885--36916
15
2.1
15
94
0
55
25
18
9
46
1.79
44238--44283
17
2.7
17
83
12
51
82
0
17
0
0.67
44244--44282
13
2.9
13
82
17
53
84
0
15
0
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44244--44285
9
4.7
9
79
8
50
85
0
14
0
0.59
45150--45526
93
4.0
93
91
1
592
31
14
19
35
1.91
45150--45526
188
2.0
187
90
1
594
31
14
19
35
1.91
46318--46769
113
4.0
113
83
3
500
37
13
18
30
1.90
46594--46638
24
1.9
23
82
13
56
48
6
26
17
1.72
46678--47031
120
2.9
122
89
3
514
40
16
17
25
1.90
47234--47309
3
24.7
3
87
12
86
39
0
0
60
0.97
47234--47309
20
3.6
22
87
12
115
39
0
0
60
0.97
47257--47295
2
21.5
2
80
19
50
43
0
0
56
0.99
48676--48728
23
2.2
23
83
10
61
43
3
0
52
1.19
52802--52835
16
2.1
16
94
0
59
32
8
26
32
1.87
57329--57376
23
2.1
23
92
0
78
27
20
18
33
1.96
57334--57388
12
4.7
12
79
4
67
25
20
21
32
1.97
58990--59103
7
16.3
7
79
0
102
21
1
32
43
1.63
58981--59085
28
3.8
28
87
0
138
22
1
31
43
1.64
59174--59227
7
7.7
7
77
8
56
16
0
40
42
1.48
60944--61018
32
2.3
32
81
4
89
32
9
16
42
1.79
60965--61031
32
2.1
31
81
8
73
40
7
13
38
1.73
61472--61539
30
2.3
30
78
0
82
29
17
11
41
1.85
62033--62115
43
1.9
43
92
0
139
36
2
36
25
1.69
63636--63694
30
2.0
30
89
0
91
44
13
11
30
1.80
68189--68236
21
2.2
22
88
3
71
35
8
27
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75648--75944
156
1.9
158
85
2
409
28
15
5
50
1.66
84132--84169
19
2.0
19
94
0
67
31
5
28
34
1.80
84641--84914
53
5.0
53
84
10
329
35
21
20
22
1.96
84615--84926
21
16.4
20
66
15
121
34
22
20
22
1.97
84611--84914
114
2.7
114
92
3
494
35
22
20
22
1.96
84699--84880
40
4.7
39
71
16
155
34
21
21
23
1.97
90137--90198
32
1.9
32
86
3
88
35
16
38
9
1.81
91117--91156
20
2.0
20
90
0
62
32
17
22
27
1.96
96029--96096
25
2.8
24
72
12
68
60
20
1
17
1.44
96049--96094
22
2.1
22
84
4
58
60
21
2
15
1.45
97808--97885
38
2.1
38
100
0
156
23
5
33
38
1.77
98064--98176
44
2.6
44
83
9
142
28
16
22
32
1.96

Tables:   1

The End!