genome.fa.s2387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002387.1 Hibiscus syriacus cultivar Beakdansim tig00004885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91409

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3229--3271	20	2.0	20	82	8	50	32	25	6	34	1.83
6696--6794	34	2.9	34	96	0	180	40	9	9	41	1.68
8290--8330	20	2.1	19	86	4	55	26	19	9	43	1.82
24166--24347	54	3.4	54	91	0	283	25	20	21	31	1.98
25415--25441	2	13.5	2	100	0	54	48	0	0	51	1.00
28642--34291	542	10.4	542	97	0	10525	36	20	9	34	1.85
36767--36811	23	2.0	23	90	0	72	24	20	28	26	1.99
45293--45393	36	2.8	36	96	3	186	38	38	13	8	1.77
47274--47417	66	2.2	66	86	2	191	20	51	12	15	1.76
47575--47777	72	2.8	72	78	4	167	36	36	11	14	1.83
47575--47750	36	4.9	36	76	4	142	36	37	11	14	1.82
47650--47777	36	3.6	36	74	16	113	35	40	10	13	1.78
58500--58570	25	2.8	25	95	0	124	26	15	19	38	1.92
58611--58648	11	3.6	10	86	13	58	0	18	39	42	1.50
58679--58731	3	17.7	3	80	7	63	64	1	1	32	1.15
58680--58731	13	4.0	13	82	14	63	65	1	1	30	1.14
58970--59216	46	5.7	45	73	12	151	26	18	29	25	1.98
58895--59216	40	7.6	43	72	13	157	25	17	30	26	1.97
58893--59127	40	5.6	41	73	11	167	25	17	31	25	1.97
58914--59245	128	2.6	128	92	3	560	25	18	30	25	1.98
59596--59639	15	2.9	15	93	0	70	43	4	20	31	1.72
59756--59894	62	2.2	62	82	10	158	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59850--59935	29	3.0	29	86	10	122	46	12	11	29	1.77
59848--59951	28	3.6	28	82	10	129	46	13	11	28	1.78
60195--60298	36	3.0	35	80	4	120	35	11	19	33	1.88
60266--60497	105	2.3	100	82	6	259	37	12	19	31	1.89
60523--60584	21	3.1	21	64	17	51	37	12	19	30	1.89
60525--60611	38	2.3	38	82	3	106	39	13	17	29	1.88
60960--61035	16	5.2	16	66	23	60	26	0	26	47	1.52
60960--61035	28	2.7	28	97	0	143	26	0	26	47	1.52
60972--61022	4	13.8	4	76	15	56	29	0	23	47	1.52
62847--62929	20	4.0	20	71	21	62	36	9	26	27	1.88
64341--64400	30	2.0	31	90	9	97	60	10	15	15	1.60
64341--64402	31	2.1	30	85	14	85	59	11	14	14	1.61
66299--66358	29	2.1	29	83	0	75	65	8	13	13	1.48
68453--68527	25	3.0	25	96	0	132	26	14	20	38	1.91
68568--68605	11	3.6	10	86	13	58	0	18	39	42	1.50
68639--68689	3	16.7	3	79	4	57	64	1	1	31	1.15
70379--70431	23	2.3	23	93	0	88	30	24	13	32	1.93
78144--78204	23	2.7	23	84	5	79	16	26	24	32	1.96
84275--84303	15	1.9	15	100	0	58	34	20	17	27	1.95
85019--85071	23	2.3	23	86	0	70	15	28	24	32	1.95

Tables:   1

The End!