Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002388.1 Hibiscus syriacus cultivar Beakdansim tig00004886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100207

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1433--1509
29
2.8
27
83
9
93
31
2
3
62
1.27
1452--1523
27
2.6
28
82
10
78
36
1
2
59
1.20
2754--2790
18
2.1
18
100
0
74
43
16
16
24
1.87
6470--6495
5
5.2
5
100
0
52
0
19
0
80
0.71
15169--15275
42
2.6
43
79
11
123
31
19
18
29
1.96
15186--15292
42
2.5
42
86
0
133
26
20
15
37
1.93
20814--20851
20
1.9
20
88
0
58
26
21
13
39
1.89
29887--29953
21
3.2
21
89
0
98
35
8
25
29
1.86
31385--31417
17
2.0
17
88
5
50
3
9
3
84
0.82
50873--50954
23
3.7
22
87
4
112
23
30
26
19
1.98
50873--50957
22
3.9
22
83
6
100
22
30
27
20
1.98
52518--52558
18
2.3
18
87
8
57
51
19
29
0
1.47
54799--54852
12
4.7
12
76
17
60
42
11
20
25
1.85
54784--54838
22
2.5
22
96
3
101
36
12
20
30
1.90
63201--63773
284
2.0
284
96
0
1056
35
24
15
25
1.94
65637--65737
23
4.4
23
98
1
195
24
25
7
41
1.82
65818--65882
7
8.7
7
76
18
60
41
0
6
52
1.26
65824--65885
18
3.4
19
85
14
94
40
0
6
53
1.27
65977--66074
14
6.9
14
72
14
67
37
1
4
57
1.25
66017--66075
3
20.3
3
74
19
54
33
1
1
62
1.15
65999--66068
23
3.0
23
80
12
65
34
1
4
60
1.25
71258--71355
3
32.7
3
93
0
169
33
2
1
63
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72717--72752
19
1.9
19
94
5
65
22
0
5
72
1.05
80508--80537
8
3.6
8
95
4
51
23
16
0
60
1.36
84043--84099
1
57.0
1
83
0
69
91
0
7
1
0.49
84037--84104
13
5.2
13
86
10
93
86
0
11
1
0.63
85113--85598
84
5.8
84
96
0
877
27
13
20
37
1.91
86316--87097
112
7.0
113
95
2
1319
37
13
19
29
1.90
86316--87097
225
3.5
225
94
1
1324
37
13
19
29
1.90
87401--87481
3
27.7
3
88
5
121
33
2
1
62
1.16
89169--89738
287
2.0
281
92
7
947
31
19
14
34
1.92
92351--92431
39
2.1
39
84
6
103
49
3
1
45
1.27
93317--93366
3
16.7
3
100
0
100
34
0
0
66
0.92
96188--96280
42
2.2
42
84
0
114
23
21
17
37
1.94
97175--97206
16
1.9
17
93
6
57
25
3
0
71
1.00
97240--97288
25
2.0
24
84
4
62
46
0
2
51
1.12

Tables:   1

The End!