genome.fa.s239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000239.1 Hibiscus syriacus cultivar Beakdansim tig00000413_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48278

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1898--2017	59	2.0	62	85	8	167	25	18	22	33	1.97
1895--2018	29	4.1	29	72	11	97	25	17	22	34	1.96
1978--2072	30	3.2	29	82	4	100	17	20	28	33	1.95
1995--2075	30	2.7	30	82	1	101	16	19	30	33	1.94
4019--4054	14	2.6	14	90	0	54	58	0	13	27	1.36
5953--6106	40	3.8	39	81	8	175	25	18	24	31	1.98
5953--6106	82	1.9	81	89	1	236	25	18	24	31	1.98
9023--9160	54	2.5	54	82	9	156	37	21	10	30	1.87
9049--9160	54	2.1	53	89	1	170	39	23	11	25	1.88
11687--11919	54	4.4	54	79	5	276	33	21	19	26	1.97
11688--11894	106	2.0	106	90	1	326	34	20	18	26	1.95
15415--15466	23	2.3	23	93	0	86	21	19	26	32	1.97
19729--20008	144	1.9	144	87	2	411	54	18	5	21	1.64
19725--20010	70	4.0	71	84	5	371	54	18	5	21	1.64
22059--22116	18	3.2	18	83	11	57	32	1	3	62	1.22
23745--23784	21	1.9	21	94	0	71	40	15	17	27	1.89
23796--23987	20	9.5	20	66	17	67	30	20	11	37	1.88
24908--24954	24	2.0	24	95	0	85	21	21	21	36	1.96
27210--27245	18	2.0	18	88	0	54	55	22	2	19	1.56
27685--27741	20	2.8	20	82	7	71	45	21	10	22	1.82
27791--27829	20	2.0	20	94	0	69	17	12	20	48	1.80
27753--27870	54	2.2	54	89	3	175	21	11	20	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27799--27845	20	2.3	20	85	0	58	25	12	23	38	1.90
29727--29822	21	4.6	21	90	3	133	23	15	39	20	1.91
29728--29875	42	3.6	42	79	3	158	27	13	37	21	1.91
29835--29873	20	1.9	21	94	5	71	30	7	35	25	1.84
30157--30355	21	9.5	21	72	9	131	34	31	12	21	1.91
30172--30329	63	2.5	63	80	8	162	33	32	12	21	1.91
30447--30591	42	3.5	42	85	2	188	20	13	40	25	1.90
30447--30612	42	4.0	41	85	5	167	21	13	38	25	1.91
32049--32101	13	4.2	13	83	16	76	37	0	13	49	1.42
32055--32100	23	2.0	23	100	0	92	34	0	13	52	1.40
33966--34023	22	2.7	21	77	12	64	24	22	32	20	1.98
37771--37992	117	1.9	117	83	5	288	28	15	9	47	1.75
40713--40745	14	2.3	15	84	10	50	48	24	12	15	1.78
40731--40845	60	1.9	60	89	7	180	35	16	16	31	1.91
40748--40845	20	4.9	20	77	7	101	34	15	16	33	1.90
40838--40906	20	3.5	20	80	7	77	18	14	18	47	1.82
40878--40962	33	2.5	33	83	5	109	22	12	23	41	1.88
40875--40962	34	2.6	34	82	5	117	21	12	23	42	1.87
41309--41363	22	2.5	22	87	0	74	25	16	40	18	1.91
41445--41554	39	2.8	39	79	4	105	39	10	20	30	1.86
41477--41553	20	3.9	20	75	14	79	40	12	19	27	1.88
44528--44603	31	2.4	30	86	8	98	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44743--44806	27	2.4	27	82	7	69	37	0	3	59	1.13
46345--46458	21	5.5	21	80	11	119	21	32	24	21	1.98
46351--46458	42	2.6	41	89	4	162	21	31	24	23	1.98
46960--47061	34	3.2	32	84	8	127	56	4	2	35	1.36
46962--47054	31	2.9	33	82	9	111	58	4	3	34	1.34
47457--47817	128	2.8	128	96	0	659	32	23	24	19	1.98

Tables:   1

The End!