Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002390.1 Hibiscus syriacus cultivar Beakdansim tig00004889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111349

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8697--8760
14
4.6
13
77
12
65
48
6
18
26
1.72
8697--8761
29
2.3
28
84
7
96
49
6
18
26
1.71
8697--8762
28
2.3
29
82
14
93
48
6
18
27
1.71
21513--21564
24
2.2
22
80
12
59
61
3
0
34
1.14
27216--27257
17
2.4
17
77
18
50
52
7
9
30
1.61
28757--28789
5
6.8
5
96
3
59
57
0
0
42
0.98
30427--30470
6
7.3
6
100
0
88
18
47
0
34
1.49
31951--32010
2
30.0
2
100
0
120
50
0
0
50
1.00
33339--33380
17
2.4
19
84
11
54
50
0
2
47
1.14
38554--38588
17
2.1
17
100
0
70
48
5
17
28
1.69
39177--39218
22
2.0
21
86
13
59
64
7
0
28
1.20
48784--48810
13
2.1
13
100
0
54
44
0
0
55
0.99
48797--48840
20
2.1
21
87
4
63
45
2
0
52
1.13
48789--48855
27
2.4
29
76
16
70
49
1
0
49
1.10
48870--48901
16
1.9
17
93
6
57
56
3
3
37
1.31
51636--51681
23
2.1
23
84
8
60
34
4
2
58
1.30
54765--54795
5
6.2
5
92
0
53
22
54
19
3
1.58
71681--71727
24
1.9
24
86
4
67
63
0
2
34
1.06
76009--76052
17
2.7
16
79
6
52
63
0
0
36
0.95
78575--78634
20
3.0
20
83
9
77
41
18
18
21
1.90
78718--78756
20
2.0
20
94
0
69
28
12
30
28
1.93
78720--78763
20
2.2
20
87
0
61
31
11
25
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81275--81351
35
2.2
35
100
0
154
27
9
14
49
1.73
94273--94339
20
3.3
20
75
8
73
28
25
20
25
1.99
94668--94712
20
2.2
20
88
0
63
15
15
26
42
1.87
95994--96068
21
3.7
21
67
19
52
16
12
40
32
1.84
97807--97870
22
3.0
21
84
6
85
21
17
40
20
1.91
98067--98103
19
1.9
19
88
0
56
29
10
21
37
1.88
100592--100643
26
2.0
26
100
0
104
53
23
23
0
1.46
100711--100767
30
1.9
30
100
0
114
24
21
19
35
1.96
102572--102659
44
2.0
44
97
0
167
38
10
20
30
1.86
103218--103273
23
2.5
22
77
5
58
35
3
7
53
1.46

Tables:   1

The End!