genome.fa.s2391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002391.1 Hibiscus syriacus cultivar Beakdansim tig00004890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196058

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4141--4190	24	2.1	24	85	7	66	26	2	12	60	1.43
5982--6060	23	3.6	21	77	5	86	26	25	22	25	2.00
5985--6079	44	2.2	42	87	7	129	26	22	24	27	2.00
5985--6079	21	4.4	21	76	9	77	26	22	24	27	2.00
12196--12366	90	1.9	93	85	8	244	30	17	22	29	1.97
12765--12822	30	1.9	31	92	3	100	31	10	27	31	1.90
12921--13017	28	3.4	28	95	1	167	34	7	15	43	1.74
15510--15615	2	53.0	2	100	0	212	50	0	0	50	1.00
16046--16108	24	2.5	24	82	10	65	50	1	0	47	1.10
16076--16131	22	2.6	21	85	5	67	42	1	1	53	1.21
16486--16533	25	2.0	24	83	4	60	47	4	2	45	1.33
19829--19873	20	2.2	21	88	8	74	42	0	22	35	1.54
19836--19876	20	2.0	20	100	0	82	41	0	19	39	1.52
20671--20886	64	3.4	60	78	13	195	44	7	6	41	1.57
20637--20886	133	1.9	129	83	8	317	45	7	5	41	1.56
23028--23067	21	2.0	21	85	5	55	27	25	12	35	1.92
23531--23571	16	2.6	15	85	11	55	58	0	31	9	1.31
25677--25720	21	2.1	21	86	0	61	29	27	27	15	1.96
25747--25791	22	2.0	22	86	4	63	31	33	26	8	1.87
27030--27065	18	2.0	18	100	0	72	11	22	33	33	1.89
26927--27290	121	3.0	121	95	0	647	24	14	25	35	1.93
27151--27186	18	2.0	18	100	0	72	11	22	33	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27001--27188	62	3.1	62	64	26	164	23	14	25	36	1.93
27297--27357	23	2.7	23	89	0	95	19	26	27	26	1.99
28107--28142	19	1.9	19	94	5	65	72	5	0	22	1.05
29384--29510	3	41.7	3	87	3	182	62	0	0	36	1.07
29758--30044	113	2.5	113	90	2	425	26	20	13	39	1.89
29986--30237	40	6.5	40	74	7	232	22	22	12	42	1.87
29871--30350	153	3.1	153	99	0	933	25	21	14	39	1.91
30177--30836	113	5.8	113	95	0	1167	27	19	14	38	1.91
29754--30576	266	3.1	264	74	9	927	26	20	14	38	1.91
31394--32159	52	14.7	52	97	1	1380	38	21	15	24	1.92
44517--44552	19	1.9	19	94	5	65	72	5	0	22	1.05
45798--45927	3	42.7	3	87	3	188	62	0	0	36	1.06
47932--48025	31	3.0	31	86	9	129	40	24	17	18	1.91
48682--48838	64	2.5	64	82	6	167	27	18	20	33	1.96
49376--49428	3	17.7	3	92	0	88	64	0	32	3	1.12
52299--52521	121	1.8	121	83	4	295	36	8	10	44	1.69
54696--54740	16	2.8	16	100	0	90	20	13	6	60	1.55
60972--61181	54	3.9	54	94	0	339	36	17	25	21	1.94
61545--61604	22	2.7	22	92	0	93	35	20	13	31	1.91
62122--62435	164	1.9	164	90	1	495	36	13	13	36	1.84
62481--62687	73	2.8	72	89	5	335	29	16	13	39	1.87
62481--62692	37	5.8	36	73	4	174	29	16	13	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62795--63025	76	3.0	76	92	0	390	23	19	21	35	1.96
63041--63448	112	3.6	112	91	2	631	39	12	17	30	1.88
64200--64239	21	1.9	21	94	0	71	25	22	20	32	1.98
65298--65390	30	3.1	30	90	1	134	20	19	26	33	1.96
66092--66134	21	2.0	21	82	8	52	32	4	11	51	1.59
68570--68609	21	1.9	21	89	0	62	25	25	20	30	1.99
69668--69760	30	3.1	30	92	1	143	20	21	25	32	1.98
70460--70502	21	2.0	21	82	8	52	32	4	11	51	1.59
72847--73069	120	1.8	121	84	5	306	36	8	10	44	1.70
74848--74903	19	2.8	19	81	7	67	41	12	26	19	1.87
74845--74912	19	3.5	19	75	4	64	36	10	29	23	1.88
76040--76119	31	2.6	31	95	0	142	32	3	7	56	1.45
76290--76334	10	4.6	10	80	5	56	31	2	0	66	1.04
76702--76760	2	29.5	2	100	0	118	49	0	0	50	1.00
79419--79502	32	2.5	32	90	5	123	10	9	39	40	1.73
79390--79498	38	3.0	36	80	15	127	12	9	36	41	1.75
79891--79937	16	2.8	17	90	6	69	29	27	6	36	1.82
82369--82398	15	2.0	15	93	0	51	26	16	13	43	1.85
86518--86576	29	2.0	29	100	0	118	30	27	10	32	1.89
86825--86859	17	2.1	17	88	0	52	28	22	31	17	1.96
93367--93427	20	3.1	20	75	11	54	11	9	18	60	1.57
93390--93461	24	3.0	24	84	10	76	11	12	18	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97378--97449	27	2.7	27	81	10	69	26	6	4	62	1.39
97677--97718	19	2.3	18	87	4	57	35	0	0	64	0.94
97568--97802	131	1.8	131	91	0	391	39	6	7	46	1.59
98484--98522	20	1.9	21	84	5	53	25	5	2	66	1.25
100847--100884	15	2.6	15	87	4	51	13	10	10	65	1.47
105386--105422	16	2.2	16	90	4	56	81	0	18	0	0.70
108864--109040	74	2.4	74	87	0	237	29	19	22	28	1.98
110189--110265	22	3.5	22	92	0	136	33	10	15	40	1.81
110771--111103	167	2.0	166	92	1	551	35	15	12	37	1.84
111106--111968	76	11.4	76	94	0	1473	23	19	21	35	1.96
113291--113325	2	17.5	2	100	0	70	48	0	0	51	1.00
113914--113938	2	12.5	2	100	0	50	48	0	0	52	1.00
114177--114229	27	2.0	26	85	7	70	41	0	1	56	1.10
114177--114229	26	2.0	26	82	7	63	41	0	1	56	1.10
117559--117605	2	23.0	2	91	8	69	48	0	4	46	1.21
130210--130307	44	2.1	47	88	7	148	27	11	21	39	1.87
139963--140035	18	4.1	18	72	15	62	75	2	16	5	1.11
139956--140019	18	3.4	18	70	19	51	76	3	14	6	1.10
140005--140062	27	2.2	25	78	6	62	70	0	24	5	1.07
141404--141911	51	9.8	51	90	2	701	29	14	26	29	1.95
141783--141973	55	3.4	56	82	5	194	29	15	21	32	1.94
147192--147269	30	2.6	30	85	0	111	42	7	14	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147538--147590	24	2.1	27	86	10	76	49	0	0	50	1.00
147602--147729	8	13.7	9	66	19	50	53	0	2	43	1.13
147602--147722	11	11.8	10	68	25	51	54	0	2	42	1.13
147607--147755	55	2.8	54	81	11	139	53	0	2	44	1.15
157786--157891	3	34.7	3	78	7	106	60	0	2	35	1.18
157792--157833	19	2.2	19	86	0	57	57	0	7	35	1.26
158142--158888	113	6.6	113	93	1	1255	28	20	12	38	1.89
158142--159948	226	8.2	225	94	3	2956	29	19	12	38	1.89
158142--159948	339	5.4	339	90	6	2919	29	19	12	38	1.89
158795--158981	93	2.0	93	100	0	374	27	20	12	39	1.88
158888--159094	113	1.8	113	100	0	414	28	20	12	38	1.89
159094--159948	113	7.6	112	94	2	1489	30	19	12	37	1.89
159001--159187	93	2.0	93	98	0	365	27	19	12	40	1.88
159576--159620	23	1.9	23	82	13	56	15	24	6	53	1.66
160030--160106	22	3.5	22	85	7	111	37	14	14	33	1.86
160492--160571	40	2.0	40	95	0	142	28	21	16	33	1.95
161538--161667	39	3.4	39	79	7	115	28	26	14	30	1.95
162696--162960	83	3.2	83	95	1	460	36	21	13	27	1.92
165195--165228	15	2.3	15	89	0	50	0	20	0	79	0.73
168508--168546	14	2.8	14	88	0	60	53	5	12	28	1.60
172167--172257	3	29.7	3	79	8	94	60	0	3	36	1.13
172173--172214	19	2.2	19	86	0	57	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191884--191935	25	2.1	25	82	10	63	7	15	1	75	1.12

Tables:   1

The End!