genome.fa.s2392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002392.1 Hibiscus syriacus cultivar Beakdansim tig00004894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115664

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7430--7456	6	4.5	6	100	0	54	85	0	14	0	0.61
7696--7749	21	2.6	21	93	0	90	40	20	11	27	1.86
8064--8115	19	2.8	19	83	11	63	82	1	3	11	0.88
8064--8116	23	2.3	24	87	6	74	83	1	3	11	0.87
9956--10006	18	2.8	18	81	0	66	25	35	23	15	1.94
12928--13090	65	2.5	64	84	3	220	26	15	26	30	1.96
13038--13088	19	2.7	19	85	8	70	25	15	35	23	1.94
12932--13139	65	3.2	65	81	12	207	26	17	25	29	1.97
14318--14436	64	1.9	63	82	5	150	37	21	17	23	1.94
15064--15121	23	2.5	24	80	5	57	32	8	17	41	1.80
15120--15187	23	3.0	23	76	8	75	22	23	26	27	1.99
21952--22004	23	2.3	23	83	0	70	20	26	24	28	1.99
26211--26298	24	3.7	24	89	6	133	36	21	19	22	1.95
26211--26293	12	6.8	13	65	15	61	37	22	18	21	1.94
28571--28632	18	3.5	17	80	6	70	14	17	46	20	1.83
30713--30810	24	4.1	24	76	10	92	39	19	17	23	1.92
30723--30805	12	6.8	13	64	15	52	39	20	18	21	1.92
34408--34463	21	2.7	21	100	0	112	32	16	8	42	1.79
35402--35440	12	3.2	12	92	3	60	10	12	30	46	1.75
36184--36459	153	1.8	151	79	12	323	39	13	11	36	1.80
37934--37985	26	2.0	25	85	10	70	67	0	0	32	0.91
41747--41819	25	3.2	25	59	22	59	34	21	2	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41753--41827	21	3.5	21	65	20	55	34	18	2	44	1.64
46579--46613	6	5.8	6	96	0	61	11	37	0	51	1.38
46700--46746	22	2.1	22	84	7	60	59	2	14	23	1.46
46699--46748	23	2.2	22	79	10	57	60	2	16	22	1.46
55673--55723	26	2.0	26	96	0	93	58	5	9	25	1.52
57527--57559	2	16.5	2	93	0	57	48	0	0	51	1.00
59137--59170	16	2.1	17	88	5	52	64	0	0	35	0.94
70736--70795	26	2.5	23	77	17	68	46	5	1	46	1.34
72148--72235	23	3.7	23	80	11	99	27	28	20	23	1.99
72988--73016	14	2.1	14	100	0	58	13	34	17	34	1.89
80398--80432	18	1.9	18	88	0	52	28	17	0	54	1.43
81532--81569	7	5.1	7	87	12	58	26	26	34	13	1.93
81532--81603	8	9.4	8	76	18	73	22	25	37	15	1.93
81532--81569	15	2.5	15	100	0	76	26	26	34	13	1.93
81559--81621	13	4.5	13	78	18	72	17	22	44	15	1.86
81570--81604	18	1.9	18	94	0	61	17	22	42	17	1.88
81544--81625	31	2.7	30	85	9	105	18	21	43	15	1.87
85383--85417	18	1.9	18	88	0	52	28	17	0	54	1.43
86518--86555	7	5.1	7	87	12	58	26	26	34	13	1.93
86518--86589	8	9.4	8	76	18	73	22	25	37	15	1.93
86518--86555	15	2.5	15	100	0	76	26	26	34	13	1.93
86545--86607	13	4.5	13	78	18	72	17	22	44	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86556--86590	18	1.9	18	94	0	61	17	22	42	17	1.88
86530--86611	31	2.7	30	85	9	105	18	21	43	15	1.87
87863--87901	14	2.6	16	88	8	55	61	33	0	5	1.18
89878--89932	23	2.5	22	88	11	78	36	20	20	23	1.95
95606--95661	20	2.7	21	94	2	96	28	21	28	21	1.99
97539--97638	23	4.3	23	74	16	91	33	28	15	24	1.95
101543--101610	30	2.3	29	82	2	82	38	8	20	32	1.84
101543--101607	29	2.2	30	80	8	78	40	9	20	30	1.83
102976--103051	17	4.4	17	76	1	71	42	9	7	40	1.66
108208--108397	90	2.1	92	84	2	240	51	6	10	32	1.60

Tables:   1

The End!