Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002393.1 Hibiscus syriacus cultivar Beakdansim tig00004895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84896

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2814--2848
14
2.5
14
100
0
70
22
14
14
48
1.79
27559--27603
19
2.4
19
96
0
81
33
20
15
31
1.93
28711--28779
26
2.7
26
83
0
93
34
28
15
20
1.94
32044--32122
29
2.8
29
92
1
124
21
20
13
44
1.86
32138--32173
12
3.0
12
87
0
54
38
22
5
33
1.77
32190--32239
27
2.0
25
81
14
59
38
18
8
36
1.80
32480--32703
64
3.5
63
83
4
245
29
18
19
33
1.96
33755--33787
14
2.4
14
100
0
66
30
6
33
30
1.82
34192--34294
40
2.7
38
80
10
104
35
13
2
47
1.58
35746--35806
7
8.6
7
76
8
61
45
21
0
32
1.52
35746--35798
14
3.6
14
89
5
70
47
20
0
32
1.51
36392--36433
9
4.5
10
80
14
54
47
0
0
52
1.00
36387--36441
28
1.9
29
92
3
94
43
0
1
54
1.10
44535--44580
12
3.7
13
80
8
51
43
2
0
54
1.12
45747--45795
2
25.0
2
95
4
91
48
0
0
51
1.00
46148--46193
24
1.9
24
82
8
58
10
10
6
71
1.30
46175--46213
17
2.4
17
86
4
53
10
15
2
71
1.23
50468--50517
21
2.2
23
82
13
59
76
8
16
0
1.02
50479--50519
17
2.5
17
80
15
50
75
7
17
0
1.02
50445--50545
29
3.6
28
72
18
86
73
8
15
1
1.17
50445--50554
28
4.0
28
70
17
79
72
8
17
1
1.17
52090--52459
180
2.0
185
94
5
655
35
19
5
39
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52733--53266
106
5.0
106
92
1
847
36
23
16
22
1.94
54263--54309
14
3.7
14
71
26
50
51
4
0
44
1.21
54261--54310
23
2.1
24
96
3
93
48
4
0
48
1.20
54578--54648
16
4.4
16
90
0
115
40
14
26
18
1.88
54578--54648
32
2.2
32
97
0
133
40
14
26
18
1.88
54935--55097
73
2.2
73
97
0
308
36
23
16
23
1.94
61956--62008
2
27.0
2
96
3
99
50
0
0
49
1.00
72322--72650
117
2.8
118
91
4
518
25
11
13
49
1.76
75421--75481
31
2.0
31
86
0
86
27
13
18
40
1.87
76725--76989
45
6.2
44
81
13
274
20
32
16
30
1.95
76852--76918
33
2.0
33
94
0
116
22
29
14
32
1.94
76764--76989
123
1.9
120
87
4
337
19
32
16
30
1.95
76885--76984
42
2.3
43
91
5
157
20
34
15
31
1.93
79380--79448
34
2.0
34
100
0
138
37
8
18
34
1.82
79573--79641
34
2.0
34
100
0
138
37
8
18
34
1.82
79327--79712
193
2.0
193
100
0
772
38
13
19
27
1.90

Tables:   1

The End!