genome.fa.s2394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002394.1 Hibiscus syriacus cultivar Beakdansim tig00004897_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71787

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10527--10567	19	2.2	19	90	0	64	34	12	19	34	1.89
11235--11481	81	3.1	81	89	0	379	36	10	20	32	1.88
11518--11801	45	6.3	45	83	2	304	36	11	25	26	1.89
15208--15273	33	2.0	33	100	0	132	33	18	18	30	1.94
20064--20108	20	2.3	21	81	14	60	60	0	2	37	1.09
25431--25455	6	4.2	6	100	0	50	48	0	36	16	1.46
30396--30435	20	1.9	20	85	10	53	42	32	7	17	1.77
33644--33719	27	2.5	33	73	24	101	34	7	10	47	1.67
37106--37154	20	2.3	23	86	13	70	55	2	2	40	1.23
43585--43630	24	2.0	23	86	4	65	30	26	19	23	1.98
44075--44116	4	10.5	4	85	10	59	23	0	2	73	0.94
45167--45208	13	3.4	13	77	12	52	71	4	2	21	1.16
45167--45223	24	2.3	24	84	3	69	71	5	3	19	1.19
46148--46327	72	2.5	72	92	3	308	32	12	6	48	1.66
46186--46305	41	3.2	41	61	26	100	35	12	5	47	1.63
46311--46364	27	2.0	27	96	0	99	27	18	5	48	1.70
48528--48744	69	3.2	68	63	26	159	35	9	15	39	1.80
48403--48805	137	2.9	137	95	0	725	35	9	16	38	1.81
52628--52668	19	2.2	19	91	8	66	36	4	0	58	1.20
58117--58209	36	2.6	37	80	14	106	40	27	10	20	1.86
65164--65247	36	2.3	36	85	4	107	40	27	13	19	1.88
67903--67997	36	2.7	35	80	11	95	40	24	12	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70648--70741	35	2.7	35	81	8	118	38	26	12	22	1.90

Tables:   1

The End!