Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002395.1 Hibiscus syriacus cultivar Beakdansim tig00004898_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81252

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13326--13372
16
2.8
17
90
3
69
36
0
2
61
1.08
21286--21390
40
2.7
40
85
5
142
51
12
16
20
1.76
23941--24272
170
2.0
166
80
3
378
24
32
18
24
1.97
26154--26212
27
2.2
27
85
14
79
61
20
0
18
1.35
28183--28253
23
3.2
22
71
15
65
26
22
23
26
2.00
28158--28241
21
4.0
21
72
13
64
27
20
21
30
1.98
28175--28281
44
2.4
44
92
0
169
27
19
22
30
1.98
34667--34802
65
2.1
64
82
6
159
33
14
20
31
1.93
35101--35686
293
2.0
293
98
0
1138
45
10
12
31
1.75
36219--36288
23
3.0
23
91
0
113
17
22
14
45
1.84
37817--38013
21
9.5
21
72
16
121
31
22
21
24
1.98
37837--37993
41
3.8
41
93
1
262
33
20
21
24
1.97
37858--37971
20
5.6
20
75
19
119
35
19
21
24
1.96
37817--38033
82
2.6
81
78
10
260
30
22
21
25
1.98
38781--38957
21
8.5
21
78
12
159
24
22
22
30
1.99
38801--38943
41
3.5
41
88
5
200
24
22
20
32
1.98
38781--38943
62
2.6
65
75
14
180
25
22
20
30
1.98
38823--38895
20
3.6
20
79
17
96
23
21
19
35
1.96
46276--46332
30
1.9
30
86
10
82
31
1
5
61
1.28
48779--48805
2
13.5
2
100
0
54
48
0
0
51
1.00
50692--50770
2
39.5
2
100
0
158
50
0
0
49
1.00
50895--50956
23
2.7
23
97
0
115
54
0
8
37
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51412--51449
19
2.1
19
90
5
60
28
10
10
50
1.70
51371--51478
52
2.1
53
87
1
155
28
17
14
38
1.90
64045--64228
96
1.9
96
92
2
307
50
18
15
15
1.78
71629--71669
17
2.3
18
87
12
66
9
73
12
4
1.24
71634--71679
15
2.9
15
87
6
56
10
71
10
6
1.30
72035--72077
14
2.9
15
93
3
70
11
69
11
6
1.35
75990--76054
29
2.2
31
78
15
75
38
6
7
47
1.57

Tables:   1

The End!