genome.fa.s2397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002397.1 Hibiscus syriacus cultivar Beakdansim tig00004900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65048

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2490--2557	4	16.2	4	73	14	57	66	2	2	27	1.21
2499--2557	22	2.7	21	84	2	73	67	1	3	27	1.16
2499--2567	22	3.2	20	78	10	66	66	4	4	24	1.28
2563--2611	22	2.3	20	80	13	55	65	2	2	30	1.15
5681--5745	32	2.0	32	100	0	130	35	15	9	40	1.79
7014--7066	24	2.2	24	100	0	106	37	7	11	43	1.69
13242--13302	24	2.7	23	82	9	74	19	36	24	19	1.95
17671--17721	21	2.4	21	96	0	93	27	17	23	31	1.97
17741--17796	21	2.7	21	88	2	78	16	16	30	37	1.90
18469--18590	3	40.0	3	85	3	163	36	0	2	60	1.10
19366--19394	13	2.2	13	100	0	58	0	24	62	13	1.32
20027--20102	35	2.2	35	79	9	84	35	3	1	59	1.24
27582--27807	114	2.0	114	91	0	362	32	16	21	29	1.95
29830--29984	54	2.9	54	93	0	247	39	16	20	23	1.92
31051--31918	76	11.4	76	97	0	1585	21	21	21	35	1.96
32050--32156	3	36.0	3	84	5	137	37	0	1	59	1.14
32097--32169	18	4.1	18	74	11	62	41	0	0	58	0.98
32933--32958	13	2.0	13	100	0	52	0	23	61	15	1.33
33594--33669	35	2.2	35	79	9	84	35	3	1	59	1.24
36073--36147	31	2.4	31	84	0	96	50	16	9	24	1.73
43520--43592	36	2.0	36	100	0	146	27	8	24	39	1.84
43626--43661	17	2.1	18	89	5	56	16	11	30	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49000--49052	3	17.3	3	81	11	63	39	0	0	60	0.97
49089--49123	17	2.1	17	88	0	52	34	37	14	14	1.86
49729--49772	23	1.9	23	100	0	88	29	18	29	22	1.97
50594--50644	19	2.6	20	90	3	77	43	23	17	15	1.88
50594--50851	20	12.6	20	73	9	126	39	19	21	19	1.93
50698--50838	43	3.3	43	83	5	198	36	17	24	22	1.95
50717--50849	40	3.2	40	82	6	176	37	16	23	22	1.93
50953--51033	6	13.7	6	98	1	155	32	50	17	0	1.46
51819--51862	20	2.2	19	84	11	61	11	15	15	56	1.66
51849--52145	20	14.6	20	77	7	150	18	22	19	39	1.93
51851--52021	40	4.2	40	85	4	207	20	25	17	36	1.94
51849--52001	83	1.8	83	87	0	225	19	25	18	36	1.94
51851--52042	103	1.9	103	92	0	321	20	25	17	36	1.94
52096--52145	19	2.5	20	87	3	66	18	18	22	42	1.90
52483--52515	9	3.8	9	84	8	50	45	0	0	54	0.99
52675--52733	21	2.7	22	73	5	66	22	23	20	33	1.97
52718--52813	40	2.4	40	89	0	156	35	17	19	27	1.95
52718--52868	20	7.6	20	79	5	117	30	20	20	28	1.98
53448--53480	9	3.8	9	84	8	50	45	0	0	54	0.99
56062--56091	11	2.7	11	89	0	51	26	26	10	36	1.88
60245--60478	67	3.5	67	87	4	316	32	23	18	26	1.97
60376--60870	225	2.2	227	89	3	748	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60376--60871	114	4.4	113	87	4	716	30	22	16	30	1.96
61598--61643	23	2.0	23	86	0	65	26	19	34	19	1.96
62361--62512	58	2.6	59	88	6	222	50	9	8	31	1.64
62670--62702	9	3.8	9	84	8	50	45	0	0	54	0.99
64923--64956	17	2.0	17	94	0	59	55	11	5	26	1.58

Tables:   1

The End!