genome.fa.s2399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002399.1 Hibiscus syriacus cultivar Beakdansim tig00004909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158962

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4563--4620	19	3.2	19	72	18	68	46	34	13	5	1.66
7786--7821	2	18.0	2	100	0	72	50	0	0	50	1.00
12883--13149	57	5.0	53	81	12	334	25	14	25	35	1.93
12948--13149	49	4.0	49	84	9	287	24	13	26	35	1.93
12891--13149	106	2.4	106	98	0	491	25	13	25	35	1.93
16591--16641	24	2.1	24	100	0	102	23	17	3	54	1.59
22659--22702	15	2.8	16	82	6	54	15	4	25	54	1.60
23723--23747	2	12.5	2	100	0	50	48	0	0	52	1.00
36968--37152	60	3.1	58	76	15	173	45	5	15	32	1.69
38441--38566	61	2.0	62	89	4	193	44	2	5	47	1.39
38574--38614	21	1.9	21	85	5	55	43	2	7	46	1.44
41149--41182	10	3.4	10	84	15	52	23	38	26	11	1.89
41186--41270	33	2.6	33	86	3	109	27	24	37	10	1.88
41274--41329	29	1.9	29	82	7	69	23	28	32	16	1.96
41388--41444	29	2.0	29	100	0	114	19	31	35	14	1.91
42844--42868	12	2.1	12	100	0	50	68	0	16	16	1.22
43125--43169	20	2.4	19	81	7	56	40	6	28	24	1.80
44411--44520	21	5.3	20	65	20	66	30	27	20	20	1.98
44396--44601	41	5.0	41	94	0	340	32	24	21	21	1.98
44621--44650	15	1.9	16	93	6	53	30	23	26	20	1.98
45292--45434	63	2.3	62	80	9	164	39	7	11	41	1.69
46400--46445	8	5.9	8	78	14	51	52	2	26	19	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46400--46447	24	2.0	24	100	0	96	50	4	25	20	1.66
48921--49121	57	3.5	57	81	5	208	37	21	15	25	1.93
48946--49121	57	3.1	57	88	3	246	37	21	14	27	1.91
49398--49467	20	3.5	20	88	0	104	14	21	20	44	1.86
49302--49447	77	1.9	77	84	2	195	23	17	19	38	1.93
53830--53913	41	2.0	41	86	4	116	21	5	13	59	1.55
55663--55695	14	2.4	14	94	0	57	24	39	30	6	1.79
55701--55757	10	5.4	10	74	12	51	28	26	38	7	1.82
55677--55761	33	2.6	33	90	0	125	27	28	36	8	1.85
55822--55943	10	11.5	10	68	8	64	11	31	31	25	1.91
55845--55877	14	2.4	14	94	0	57	6	30	39	24	1.79
55864--55941	20	3.9	20	93	0	129	12	26	33	26	1.93
55980--56037	29	2.0	29	89	0	89	22	24	37	15	1.93
58185--58225	2	19.0	2	85	14	55	46	0	7	46	1.30
58185--58222	7	5.7	7	96	3	62	47	0	7	44	1.32
61208--61262	22	2.4	24	82	8	62	58	0	1	40	1.09
68785--68825	16	2.6	16	96	0	73	21	24	12	41	1.87
70235--70382	59	2.5	59	94	0	269	33	16	21	29	1.95
70275--70368	28	3.2	28	63	14	73	30	12	22	34	1.91
73974--74012	19	2.0	21	90	10	64	53	0	0	46	1.00
74528--74643	26	4.5	26	95	0	205	31	7	31	28	1.85
75802--75961	77	2.0	80	86	5	229	43	9	21	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76632--76673	21	2.0	21	86	9	59	50	0	0	50	1.00
77271--77322	21	2.5	21	96	0	95	48	9	5	36	1.60
79825--79904	41	2.0	39	85	4	106	38	3	32	25	1.73
80171--80250	41	2.0	39	85	4	106	38	3	32	25	1.73
79580--80260	346	2.0	332	95	4	1227	30	18	23	26	1.98
80677--80709	2	16.5	2	100	0	66	51	0	0	48	1.00
83585--83773	94	2.0	94	100	0	378	19	23	17	40	1.91
84035--84503	5	96.6	5	80	16	485	59	1	0	39	1.10
84072--84487	53	7.9	52	82	14	425	58	1	0	39	1.07
92291--92321	2	15.5	2	100	0	62	51	0	0	48	1.00
95664--95778	60	1.9	60	87	3	169	44	13	7	33	1.73
96005--96068	31	2.0	32	87	3	94	56	3	9	31	1.47
97978--98251	43	6.4	42	78	5	201	29	20	21	27	1.98
98003--98203	86	2.3	86	83	3	235	26	21	21	29	1.99
102084--102472	41	9.3	41	79	7	334	35	19	17	27	1.94
102362--102472	40	2.7	40	84	4	134	37	17	13	31	1.88
103025--103075	16	3.2	16	86	2	59	7	5	23	62	1.44
104092--104117	12	2.2	12	100	0	52	30	0	26	42	1.56
107897--107932	2	17.5	2	94	5	63	47	2	0	50	1.15
109257--109297	14	2.9	14	96	0	73	51	0	26	21	1.48
110383--110408	6	4.3	6	100	0	52	84	0	0	15	0.62
111415--111452	9	3.8	10	86	10	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112584--112623	21	1.9	21	89	0	62	0	2	20	77	0.88
118175--118247	31	2.3	32	97	2	139	56	2	13	27	1.51
118809--119015	75	2.8	75	87	1	281	23	30	24	21	1.99
124765--124976	77	2.7	77	84	5	250	24	33	23	19	1.97
130740--130801	23	2.9	21	85	7	81	20	35	25	17	1.95
132738--132787	9	6.1	8	78	17	50	14	0	26	60	1.34
132739--132781	17	2.5	17	85	7	61	13	0	27	58	1.37
133380--133591	76	2.8	76	86	2	273	23	33	23	20	1.97
136545--136595	9	6.2	8	76	19	52	13	0	27	58	1.36
136547--136590	17	2.6	17	85	7	63	13	0	29	56	1.38
137169--137376	75	2.8	75	87	3	276	24	31	23	21	1.98
138485--138568	33	2.5	34	96	1	152	60	0	0	39	0.97
140611--140684	31	2.4	30	82	10	87	17	35	8	39	1.79
144546--144816	134	2.0	135	91	0	436	47	18	15	17	1.82
146175--146224	25	2.0	25	88	7	75	44	26	8	22	1.80
148587--148691	54	1.9	54	90	0	165	40	5	13	40	1.68
149355--149381	2	13.5	2	100	0	54	51	0	0	48	1.00
150488--150553	31	2.1	32	94	2	116	39	9	10	40	1.71
151089--151130	21	2.0	21	86	9	59	11	2	26	59	1.45
151942--152077	69	2.0	69	100	0	272	36	16	5	41	1.72
152644--152687	21	2.2	20	88	11	65	63	15	0	20	1.31
154681--154730	19	2.6	19	87	12	68	72	8	2	18	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154741--154771	10	3.0	10	90	9	53	32	0	0	67	0.91
154755--154788	17	2.0	17	88	0	50	41	0	0	58	0.98
155249--155284	18	2.1	18	89	5	56	72	0	8	19	1.10
156357--156388	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1

The End!