genome.fa.s24.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000024.1 Hibiscus syriacus cultivar Beakdansim tig00000042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74730

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3206--3406	101	2.0	99	94	4	350	29	19	16	33	1.95
5287--5333	23	2.1	22	96	4	85	40	44	4	10	1.59
9345--9392	7	6.7	7	85	4	69	47	0	0	52	1.00
9334--9392	14	4.1	14	82	8	66	45	0	1	52	1.10
9358--9409	22	2.4	22	87	6	70	51	0	0	48	1.00
21159--21244	23	3.7	23	84	3	102	17	25	24	32	1.97
23911--23953	17	2.6	16	78	7	50	34	0	25	39	1.56
24823--24865	22	2.0	22	90	0	68	27	25	27	18	1.98
26273--26363	23	4.0	23	86	0	119	18	26	25	29	1.98
26594--26633	22	1.9	21	85	10	55	32	0	17	50	1.47
29031--29073	17	2.6	16	78	7	50	34	0	25	39	1.56
29946--29988	22	2.0	22	85	0	59	27	27	27	16	1.97
31406--31496	23	4.0	23	82	0	110	18	25	26	29	1.98
31728--31767	22	1.9	21	85	10	55	32	0	17	50	1.47
36514--36646	13	10.9	12	68	18	53	69	2	3	24	1.16
36515--36637	24	4.9	27	69	21	72	69	2	4	23	1.17
36872--36910	2	19.5	2	100	0	78	51	0	0	48	1.00
37096--37136	2	20.5	2	100	0	82	51	0	0	48	1.00
37247--37289	12	3.6	12	83	0	59	67	0	4	27	1.10
37192--37318	59	2.2	58	77	14	129	67	0	7	24	1.20
37861--37965	37	2.8	37	88	0	156	31	14	14	40	1.86
38696--39777	106	10.3	106	89	2	1579	22	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39585--39965	186	2.0	188	93	3	662	21	18	25	35	1.96
39691--39857	80	2.1	80	93	0	280	19	19	25	35	1.95
39772--40040	108	2.5	108	90	2	400	23	16	24	36	1.95
40872--40941	22	3.2	22	90	6	115	24	14	25	35	1.93
41564--41632	13	4.8	14	81	16	79	0	15	8	75	1.04
44964--45000	19	1.9	19	89	10	58	67	0	24	8	1.17
46158--46212	12	4.7	12	75	11	51	78	1	1	18	0.94
46132--46199	27	2.4	28	74	16	70	73	1	7	17	1.13
46216--46288	35	2.3	31	84	13	87	61	2	4	31	1.29
46216--46280	33	1.9	34	84	9	89	61	3	4	30	1.31
46518--46548	2	15.5	2	100	0	62	51	0	0	48	1.00
46595--46662	23	3.0	22	75	16	68	64	0	4	30	1.13
46769--46809	11	3.6	11	87	6	55	65	4	4	24	1.32
46826--46878	26	2.0	28	85	14	76	67	1	0	30	1.01
46893--46947	12	4.5	12	79	2	56	69	0	3	27	1.05
46894--46944	24	2.1	24	92	0	84	68	0	3	27	1.07
47490--47587	37	2.6	37	85	0	133	36	11	10	41	1.75
49759--49866	13	7.6	14	66	19	55	45	0	0	53	1.06
49779--49813	19	1.9	19	88	11	56	37	0	0	62	0.95
49750--49866	43	2.7	44	70	17	109	47	0	0	52	1.06
49892--49920	2	15.0	2	92	7	51	51	0	0	48	1.00
52761--52801	22	1.9	21	90	5	64	12	4	24	58	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52836--52871	2	18.0	2	100	0	72	50	0	0	50	1.00
57252--57695	225	2.0	223	92	2	748	31	17	20	31	1.95
57949--57991	17	2.5	17	88	0	68	4	11	20	62	1.46
59247--59284	18	2.1	19	95	5	69	0	23	21	55	1.44
59247--59294	18	2.7	18	87	6	53	0	22	22	54	1.45
60845--60925	23	3.7	22	76	12	78	19	24	30	24	1.98
67039--67078	21	1.9	21	85	10	55	35	10	2	52	1.48
69020--69056	18	2.1	18	100	0	74	24	16	21	37	1.93
69021--69231	65	3.3	63	76	10	194	26	18	23	31	1.97
69629--69676	22	2.2	22	92	7	80	37	8	4	50	1.52
70511--70559	22	2.2	22	100	0	98	28	20	12	38	1.89

Tables:   1

The End!