genome.fa.s2401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002401.1 Hibiscus syriacus cultivar Beakdansim tig00004911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94049

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142--1182	3	13.7	3	100	0	82	34	0	0	65	0.93
2997--3065	32	2.2	32	83	0	84	36	23	11	28	1.90
3941--4001	20	3.1	20	80	2	70	34	6	19	39	1.78
4078--4131	21	2.6	21	93	0	90	37	18	18	25	1.94
5883--5932	20	2.6	20	90	6	77	18	50	22	10	1.76
5909--5938	13	2.3	13	94	0	51	20	46	20	13	1.83
5927--6170	135	1.8	135	82	3	321	31	19	15	33	1.93
7607--7654	19	2.5	20	86	3	62	50	6	14	29	1.67
7626--7701	20	3.7	21	68	8	57	51	5	14	28	1.64
8980--9026	21	2.2	21	96	0	85	46	17	12	23	1.82
8986--9036	21	2.6	19	87	9	68	43	15	13	27	1.85
10685--10732	21	2.3	21	85	7	62	16	25	35	22	1.95
12196--12228	13	2.5	13	100	0	66	15	30	33	21	1.94
13936--13987	20	2.8	18	85	8	68	32	13	9	44	1.76
14468--14801	178	1.9	178	87	0	488	29	19	14	36	1.92
18073--18110	20	1.9	20	94	0	67	31	34	15	18	1.92
18071--18252	91	2.0	92	82	8	228	29	24	17	29	1.97
26744--26781	20	1.9	20	88	0	58	31	31	15	21	1.94
26804--26891	46	1.9	46	90	2	142	28	27	18	26	1.98
28218--28272	20	2.7	20	94	2	92	27	18	34	20	1.95
28292--28392	21	4.8	21	80	12	118	24	17	33	23	1.96
28472--28529	30	2.0	29	90	10	91	44	17	5	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28472--28531	29	2.0	30	93	6	104	43	16	6	33	1.74
29751--29809	23	2.7	22	75	10	59	30	18	3	47	1.65
29801--29848	19	2.5	20	86	3	62	29	14	6	50	1.67
31193--31355	65	2.5	64	84	3	220	26	15	26	30	1.96
31303--31353	19	2.7	19	85	8	70	25	15	35	23	1.94
36908--37038	27	4.9	27	76	8	90	28	6	22	42	1.79
36949--37038	26	3.4	26	77	11	94	30	4	21	44	1.71
47321--47349	2	14.5	2	100	0	58	51	0	0	48	1.00
48734--48796	31	2.0	31	96	0	117	17	12	22	47	1.81
50024--50078	2	27.5	2	100	0	110	49	0	0	50	1.00
50069--50110	20	2.0	21	95	4	77	50	23	0	26	1.50
50345--50380	16	2.2	16	95	0	63	22	8	8	61	1.51
55097--55150	28	2.0	28	86	10	78	31	20	0	48	1.50
55108--55174	13	5.1	14	69	20	54	34	19	0	46	1.50
55539--55606	30	2.3	30	87	5	93	42	8	23	25	1.82
55862--56316	231	2.0	232	80	2	529	37	21	15	25	1.93
59274--59307	12	2.7	13	81	9	52	52	5	0	41	1.25
67262--67301	21	2.0	21	85	5	55	20	20	5	55	1.62
69271--69342	24	3.0	24	83	2	92	50	18	11	20	1.77
69275--69366	12	7.8	12	71	16	57	47	18	14	19	1.82
69273--69380	47	2.3	47	81	12	123	48	17	13	20	1.81
69274--69380	24	4.5	24	73	11	87	47	17	14	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70079--70119	18	2.3	18	95	0	73	12	21	48	17	1.79
70060--70102	13	3.3	13	96	0	77	16	23	44	16	1.86
72112--72183	24	3.0	24	81	2	92	51	16	12	19	1.76
72145--72180	11	3.2	11	84	7	54	50	19	16	13	1.79
72116--72184	12	5.8	12	72	16	54	50	17	14	17	1.78
72114--72221	47	2.3	48	80	9	123	49	15	13	21	1.79
74636--74676	18	2.3	18	95	0	73	12	21	48	17	1.79
76750--76821	24	3.0	24	81	2	83	51	15	12	20	1.75
76758--76818	12	5.3	11	75	11	50	50	16	13	19	1.77
85542--85597	7	7.4	7	78	13	58	0	16	5	78	0.92
85542--85598	16	3.7	16	76	9	64	0	15	5	78	0.91
88229--88261	17	1.9	17	88	11	50	36	0	9	54	1.32
93159--93206	23	2.1	23	84	3	62	58	8	18	14	1.61
93170--93216	23	2.0	23	87	0	67	51	8	21	19	1.73

Tables:   1

The End!