genome.fa.s2402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002402.1 Hibiscus syriacus cultivar Beakdansim tig00004913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127585

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11365--11426	30	2.1	30	90	0	97	35	17	4	41	1.71
29396--29425	15	2.0	15	100	0	60	0	13	53	33	1.40
29397--29456	15	4.0	15	80	8	59	0	21	45	33	1.52
30304--30855	102	5.4	102	83	3	604	29	5	41	22	1.77
31280--31406	54	2.4	54	94	0	218	19	5	48	25	1.70
33778--33935	82	2.0	79	86	10	227	42	18	18	20	1.90
34615--34704	39	2.3	40	84	3	112	57	8	8	24	1.57
40121--40159	18	2.2	18	100	0	78	15	0	15	69	1.20
40127--40169	18	2.3	18	84	8	50	18	2	20	58	1.50
45771--45824	21	2.6	21	90	0	81	35	27	25	11	1.90
48761--48914	31	5.0	31	96	1	274	19	19	22	38	1.94
50011--50134	58	2.1	58	98	0	239	41	15	12	30	1.83
56595--56665	27	2.6	27	80	8	74	25	7	19	47	1.74
58879--59009	30	4.4	30	85	3	138	32	14	23	29	1.94
61868--61895	4	7.0	4	100	0	56	25	0	25	50	1.50
66303--66482	42	4.3	42	84	6	134	37	19	19	23	1.94
66337--66404	19	3.4	19	67	21	57	41	16	19	23	1.90
66327--66482	42	3.7	42	88	6	228	35	19	20	25	1.96
66327--66482	83	1.9	84	86	6	228	35	19	20	25	1.96
66344--66505	83	2.0	83	81	4	193	36	17	20	24	1.95
67580--67738	52	3.1	52	96	0	291	32	6	16	44	1.72
67967--68145	41	4.4	40	72	14	132	34	17	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70134--70229	36	2.6	37	90	1	158	18	30	14	36	1.91
70120--70224	36	2.9	36	88	1	147	19	30	15	35	1.92
71122--71180	21	2.8	21	86	0	73	18	3	20	57	1.54
71383--71603	43	5.1	43	92	0	343	28	22	23	25	1.99
71350--71644	86	3.4	86	84	1	306	29	22	21	26	1.99
71350--71644	129	2.3	129	82	2	344	29	22	21	26	1.99
80956--80988	16	2.1	16	100	0	66	36	0	18	45	1.49
81335--81376	22	1.9	22	95	0	75	23	40	23	11	1.88
86205--86292	20	4.3	20	71	8	70	32	23	14	28	1.94
86220--86309	41	2.2	41	80	7	103	31	20	17	31	1.96
86205--86332	61	2.1	60	79	4	141	32	24	16	27	1.96
87575--87602	2	14.0	2	100	0	56	50	0	0	50	1.00
90682--90901	115	1.9	115	86	9	315	53	4	13	29	1.58
97331--97743	221	1.9	221	95	1	747	30	15	25	29	1.96
101229--101265	19	1.9	19	94	0	65	24	5	32	37	1.78
102369--102593	36	6.2	36	94	2	362	31	24	27	16	1.96
106308--106373	27	2.7	23	72	17	60	31	21	21	25	1.98
106309--106359	27	1.9	26	88	4	75	33	23	17	25	1.96
112597--112639	13	3.3	13	93	0	77	16	46	20	16	1.84
112580--112620	18	2.3	18	100	0	82	17	51	17	14	1.77
115149--115243	24	4.0	24	84	0	118	18	14	17	48	1.81
115172--115241	12	5.8	12	81	6	79	14	15	18	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115135--115243	48	2.3	48	85	3	139	18	16	17	47	1.83
117382--117438	13	4.3	13	84	8	71	15	42	22	19	1.89
117360--117405	18	2.6	18	100	0	92	17	52	17	13	1.75
117385--117439	12	4.2	12	82	15	65	14	41	23	20	1.89
117415--117446	7	4.4	7	92	7	55	12	34	28	25	1.92
117400--117445	15	3.3	15	91	8	71	15	36	26	21	1.93
119959--120018	12	5.0	12	82	8	77	15	16	18	50	1.79
119922--120018	48	2.0	48	84	4	124	18	17	17	46	1.85
119939--120030	48	1.9	48	86	0	130	19	15	16	48	1.81
119922--120030	24	4.5	24	79	2	112	19	16	16	47	1.83
121325--121371	24	1.9	24	91	4	76	48	2	12	36	1.53
122206--122284	35	2.3	35	84	4	97	40	15	13	30	1.86
123139--123169	13	2.3	14	94	5	55	74	0	0	25	0.82
123504--123579	29	2.5	31	75	10	86	52	5	2	39	1.38
123598--123675	33	2.3	34	88	6	131	38	15	7	38	1.76
124852--124937	31	2.8	31	76	11	88	37	16	24	22	1.93

Tables:   1

The End!