genome.fa.s2403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002403.1 Hibiscus syriacus cultivar Beakdansim tig00004914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75673

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7906--8262	176	2.0	177	84	1	457	36	15	12	36	1.84
9093--9130	13	2.8	13	88	4	58	60	0	0	39	0.97
12074--12114	3	13.7	3	100	0	82	68	0	0	31	0.90
30112--30151	2	20.5	2	94	5	73	47	0	0	52	1.00
34106--34153	18	2.7	17	78	9	51	72	4	8	14	1.23
34164--34577	35	11.9	34	71	14	142	45	7	4	42	1.52
34219--34296	33	2.5	33	83	10	92	43	7	6	42	1.59
34189--34577	38	10.9	38	74	14	257	44	7	4	42	1.53
34322--34577	75	3.4	74	77	13	240	44	6	4	44	1.51
35927--35962	9	4.0	9	89	10	56	13	22	33	30	1.93
42697--42839	60	2.4	60	82	2	162	30	22	4	41	1.75
44798--44823	2	13.0	2	100	0	52	50	0	0	50	1.00
46880--46925	24	1.9	24	86	8	67	69	4	4	21	1.24
46880--46931	24	2.2	24	82	6	61	71	3	3	21	1.18
55556--55621	31	2.1	31	83	8	80	21	15	9	54	1.68
61471--61590	42	2.9	42	90	3	181	15	15	19	49	1.80
61762--61853	43	2.2	43	80	9	100	53	1	1	44	1.15
61830--61929	28	3.6	26	76	16	96	44	1	2	53	1.19
61830--61928	27	3.5	28	78	15	98	44	1	2	52	1.19
62090--62159	20	3.5	20	92	0	122	37	14	8	40	1.76
62090--62168	40	2.0	40	87	0	113	36	15	7	40	1.75
62142--62221	15	5.4	15	87	3	117	35	18	7	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62142--62221	30	2.7	30	94	1	135	35	18	7	38	1.79
62142--62228	45	2.0	44	90	2	138	33	18	6	41	1.77
62928--62971	6	7.3	6	89	0	70	13	50	2	34	1.55
65844--65901	22	2.6	22	91	0	98	22	46	13	17	1.83
66282--66314	14	2.4	14	100	0	66	15	12	18	54	1.71
66312--66366	19	2.9	19	83	0	74	10	18	21	49	1.78
67665--67700	18	1.9	19	94	5	65	30	47	11	11	1.74
67921--67977	21	2.7	21	78	5	62	22	17	35	24	1.95
68242--68380	20	7.5	19	76	16	139	37	24	20	17	1.94
68295--68380	19	4.5	19	86	5	93	37	24	20	17	1.94
68241--68340	53	1.9	52	87	6	148	40	25	18	17	1.91
68219--68360	71	2.0	72	86	9	200	40	24	17	16	1.90
68242--68419	91	2.0	91	89	4	279	38	22	20	18	1.94
68473--68521	20	2.5	20	83	6	64	18	18	26	36	1.94
68994--69114	41	2.9	42	76	9	124	22	36	18	23	1.95
69055--69114	20	3.0	20	75	2	66	21	38	20	20	1.94
72915--72974	24	2.5	24	83	0	84	38	18	18	25	1.93
73755--73837	43	1.9	43	83	9	107	24	15	27	32	1.95
73776--73925	20	7.4	20	80	10	171	22	17	28	31	1.96
73774--73925	59	2.5	60	91	5	243	22	17	28	31	1.96
73776--73944	59	2.8	59	83	10	216	23	17	27	31	1.97
73980--74044	20	3.3	20	77	12	71	26	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73776--74063	39	7.2	40	73	11	182	26	18	24	31	1.97

Tables:   1

The End!