genome.fa.s2404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002404.1 Hibiscus syriacus cultivar Beakdansim tig00004919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175399

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1015--1046	13	2.5	13	100	0	64	12	25	46	15	1.81
6790--6830	17	2.5	16	88	11	57	65	4	0	29	1.13
27367--27519	53	2.9	53	85	4	193	22	26	20	30	1.99
36164--36274	45	2.3	47	84	7	145	41	19	9	28	1.84
43110--43145	16	2.1	18	90	10	58	61	0	0	38	0.96
43110--43160	18	2.9	17	83	16	61	60	0	3	35	1.15
47251--47291	21	2.0	21	100	0	82	21	24	29	24	1.99
49716--49770	24	2.3	24	100	0	110	38	12	23	25	1.90
62380--62631	131	1.9	131	95	0	459	34	14	17	33	1.90
63053--63121	23	3.0	23	82	0	93	30	24	26	18	1.98
63590--63622	2	16.5	2	100	0	66	48	0	0	51	1.00
64705--64782	20	3.8	20	75	18	70	24	25	19	30	1.98
66569--66595	13	2.1	13	100	0	54	14	0	0	85	0.61
77978--78026	18	2.7	19	81	18	68	71	0	18	10	1.13
78023--78093	7	8.9	7	72	24	52	73	0	21	5	1.04
79463--79843	55	6.9	54	83	7	344	28	17	25	28	1.98
79463--79767	110	2.8	109	85	5	391	27	18	25	28	1.98
79463--79763	165	1.8	165	83	7	405	27	18	25	28	1.98
79463--79843	165	2.3	164	80	9	400	28	17	25	28	1.98
81649--81680	7	4.7	7	92	7	57	12	0	0	87	0.54
81649--81680	13	2.4	14	94	5	57	12	0	0	87	0.54
85985--86048	23	2.8	23	80	0	83	31	23	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87626--87703	20	3.8	20	75	18	70	23	25	20	30	1.98
98329--98378	26	2.0	25	84	11	66	46	4	8	42	1.52
103825--103864	20	2.0	20	90	9	64	30	17	22	30	1.97
109890--109935	24	1.9	24	82	8	58	34	13	2	50	1.53
110028--110153	22	5.8	21	76	20	77	54	1	7	36	1.37
110050--110184	14	9.4	14	72	22	52	52	1	5	40	1.35
110012--110152	37	3.9	36	87	8	155	54	2	6	36	1.41
110020--110153	57	2.5	52	82	14	159	55	2	6	35	1.39
110150--110220	21	3.6	21	71	19	71	42	2	1	53	1.24
110151--110213	18	3.3	19	74	17	67	44	3	1	50	1.27
110315--110372	16	3.7	16	81	2	64	44	13	15	25	1.83
110704--110747	21	2.1	21	91	0	70	31	31	4	31	1.78
115564--115683	40	3.0	40	97	0	222	23	15	26	34	1.95
115827--115956	47	2.8	46	86	9	192	39	6	20	34	1.77
120664--120729	27	2.5	27	81	13	77	39	1	3	56	1.24
120690--120739	18	2.8	18	90	0	73	36	2	2	60	1.20
120800--120861	29	2.0	30	90	9	99	33	20	9	35	1.86
133365--133405	17	2.2	20	87	12	61	36	2	4	56	1.34
139811--140054	60	4.1	59	73	11	201	41	13	17	27	1.87
139809--140047	120	2.0	119	85	4	320	41	14	16	27	1.87
140333--140576	60	4.1	59	73	9	199	41	13	17	27	1.87
140309--140569	120	2.2	119	83	5	314	41	14	17	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139548--140591	522	2.0	522	99	0	2070	44	13	16	25	1.85
140345--140583	122	2.0	120	82	3	291	42	13	16	27	1.86
140347--140611	122	2.2	120	80	5	282	42	13	16	27	1.85
141104--141128	2	12.5	2	100	0	50	52	0	48	0	1.00
155351--155400	18	2.8	18	80	17	59	50	0	2	48	1.12
155901--155970	21	3.1	23	72	17	58	41	1	0	57	1.08
165057--165269	112	1.9	110	98	1	408	31	20	11	36	1.88
167357--167399	12	3.7	12	93	3	70	76	4	18	0	0.95
167879--167928	20	2.5	20	100	0	100	54	4	10	32	1.52
169465--169515	20	2.5	21	96	3	95	19	29	27	23	1.98
169549--169604	21	2.7	20	81	8	67	35	41	8	14	1.77
170056--170115	23	2.5	24	86	5	95	23	36	11	28	1.90

Tables:   1

The End!