genome.fa.s2407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002407.1 Hibiscus syriacus cultivar Beakdansim tig00004925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161894

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17804--17861	30	1.9	30	96	0	107	15	24	20	39	1.91
18750--18799	24	2.1	24	92	0	82	10	32	26	32	1.89
18750--18814	24	2.7	25	85	7	73	10	32	27	29	1.90
22008--22066	11	5.3	11	71	18	50	74	1	1	22	1.00
22008--22070	30	2.0	30	84	12	81	74	1	3	20	1.04
22008--22077	23	3.1	23	74	13	56	72	1	2	22	1.05
23822--24005	84	2.2	86	83	9	270	23	18	25	32	1.97
24051--24202	37	4.3	37	74	18	135	40	11	20	27	1.87
24174--24215	21	2.0	20	90	4	66	38	11	19	30	1.88
24322--24650	116	2.8	116	91	1	509	24	17	25	33	1.96
25352--25425	32	2.3	32	81	4	87	32	20	16	31	1.94
25364--25439	32	2.4	31	78	8	80	34	22	13	30	1.92
31462--31491	12	2.4	13	94	5	53	46	3	40	10	1.54
34666--34731	3	22.3	3	76	14	66	57	0	0	42	0.98
34885--35521	76	8.4	76	97	0	1204	34	23	19	22	1.96
36367--36421	22	2.5	22	93	0	101	38	14	10	36	1.81
39069--39288	114	1.9	114	95	0	395	30	20	15	33	1.93
43528--43587	27	2.3	27	76	2	68	60	8	11	20	1.57
43647--43688	7	6.0	7	78	10	50	54	14	16	14	1.71
46118--46171	2	27.0	2	96	0	99	48	0	0	51	1.00
47546--47614	3	23.3	3	77	14	72	57	0	0	42	0.98
47537--47602	22	2.9	24	75	20	61	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47535--47614	21	3.9	22	80	20	102	56	0	0	43	0.99
47535--47618	9	8.3	11	77	19	76	55	0	0	44	0.99
48188--48289	39	2.6	40	75	10	102	41	12	9	36	1.77
48147--48289	74	1.9	76	81	8	175	40	13	11	34	1.80
48270--48347	38	2.1	38	90	0	120	33	17	12	35	1.88
48948--48997	17	2.9	17	78	0	64	34	6	2	58	1.34
54491--54656	60	2.8	60	77	2	163	31	19	4	43	1.72
54833--54874	22	1.9	22	90	0	66	16	0	2	80	0.81
61953--61980	14	2.0	14	100	0	56	35	21	14	28	1.92
63592--63682	31	2.9	30	86	3	110	36	9	12	41	1.76
72523--72732	76	2.8	77	86	2	273	23	32	22	20	1.98
75530--75556	2	13.5	2	100	0	54	51	0	0	48	1.00
75882--75919	19	2.1	19	85	5	51	50	10	10	28	1.70
76227--76319	41	2.3	41	84	0	114	37	7	13	40	1.74
79102--79148	23	2.0	23	87	0	67	19	21	10	48	1.78
81143--81202	21	2.9	21	89	0	102	18	11	23	46	1.81
82204--82279	30	2.5	31	78	8	84	55	0	1	43	1.08
82354--82417	30	2.1	30	88	5	94	64	9	6	20	1.45
83242--83275	17	1.9	18	88	5	52	41	0	5	52	1.25
83654--83716	30	2.1	30	91	5	101	44	4	7	42	1.54
83933--84013	32	2.5	32	80	7	85	32	14	9	43	1.79
87054--87114	26	2.3	26	88	0	86	37	8	8	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91830--91890	16	3.8	16	86	0	86	59	21	9	9	1.58
92963--93003	14	2.9	14	81	0	55	56	19	14	9	1.66
92972--93024	24	2.2	24	79	0	61	47	24	18	9	1.78
97547--97582	18	2.1	18	89	5	56	47	5	0	47	1.25
97555--97617	31	2.0	33	93	6	112	38	7	0	53	1.30
97763--97797	14	2.5	15	90	9	56	25	0	34	40	1.56
98039--98112	31	2.4	30	82	12	89	51	17	12	18	1.76
98039--98125	30	2.9	30	77	16	90	54	16	13	16	1.72
103923--104331	20	20.5	20	85	5	522	34	26	18	20	1.95
105012--105058	24	2.0	24	86	0	67	27	12	21	38	1.90
105233--105257	12	2.1	12	100	0	50	72	0	28	0	0.86
107536--107789	19	14.4	19	80	17	316	46	18	20	14	1.83
107536--107737	33	5.8	33	82	13	173	46	18	21	13	1.83
107564--107789	52	4.2	52	93	5	380	46	16	21	14	1.83
107622--107811	33	5.5	33	90	7	247	46	17	21	14	1.84
107818--107899	19	4.6	19	82	14	120	14	23	18	43	1.86
108006--108042	14	2.6	14	91	0	65	45	21	0	32	1.52
108631--108765	19	7.6	19	75	16	119	9	18	25	45	1.80
108653--108709	14	3.7	14	72	20	51	7	19	28	45	1.76
108636--108728	33	2.8	33	91	0	159	8	19	24	47	1.77
108809--109467	93	7.1	93	99	0	1293	46	19	12	21	1.83
111168--111257	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111160--111274	33	3.5	33	95	0	212	45	20	24	9	1.81
111167--111279	19	6.8	18	72	23	88	43	22	24	9	1.83
111291--111345	14	3.6	14	73	21	56	9	25	23	41	1.83
111275--111345	33	2.2	33	94	0	124	8	22	25	43	1.81
111286--111367	33	2.5	33	89	2	119	9	25	21	42	1.84
111298--111386	20	4.8	20	72	19	75	12	24	19	43	1.85
111466--111536	33	2.2	33	92	0	115	47	18	22	11	1.80
111718--111772	22	2.5	22	81	0	74	20	16	40	23	1.91
111918--112091	20	8.6	20	83	5	217	19	19	26	34	1.96
111920--112091	60	2.8	60	84	0	245	19	19	26	34	1.96
111917--112111	20	9.6	20	82	1	75	18	19	25	35	1.95
112167--112218	20	2.6	20	96	0	95	21	13	26	38	1.90
125007--125077	36	2.0	36	94	0	124	29	22	14	33	1.93
134542--134614	25	3.0	23	76	11	67	43	0	2	53	1.15
141980--142009	2	15.0	2	100	0	60	50	0	0	50	1.00
144584--144672	46	2.0	44	89	8	135	47	13	1	38	1.50
144630--144662	16	2.1	16	100	0	66	45	12	0	42	1.41
145479--145516	15	2.5	15	100	0	76	57	0	0	42	0.98
155224--155351	59	2.2	58	77	11	134	26	11	14	47	1.78

Tables:   1

The End!