genome.fa.s2412.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002412.1 Hibiscus syriacus cultivar Beakdansim tig00004931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115017

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191--1234	21	2.1	21	83	4	54	11	18	0	70	1.16
4789--4822	17	2.1	16	88	5	50	14	8	0	76	1.01
7757--7818	13	4.8	13	91	0	88	32	16	20	30	1.95
18997--19040	2	22.0	2	100	0	88	50	0	0	50	1.00
19649--19673	12	2.1	12	100	0	50	40	24	0	36	1.55
20458--20613	79	2.0	79	92	2	260	37	10	16	35	1.83
20780--21024	122	2.0	122	98	0	472	35	6	5	52	1.51
21659--21720	21	2.9	21	80	2	70	30	8	9	51	1.63
22648--22685	20	1.9	20	88	0	58	36	2	0	60	1.11
31147--31180	3	11.3	3	93	0	59	32	2	0	64	1.08
31582--31611	9	3.3	9	100	0	60	10	30	23	36	1.87
32573--32645	23	3.2	23	72	5	67	13	20	12	53	1.72
38444--38511	25	2.7	25	81	0	91	47	10	10	32	1.71
39585--39636	26	1.9	28	84	7	72	44	0	7	48	1.31
39587--39629	20	2.2	19	83	8	50	44	0	6	48	1.29
41923--42068	49	3.0	49	97	0	274	39	13	15	32	1.85
46102--46139	2	19.0	2	100	0	76	50	0	0	50	1.00
46441--46483	16	2.8	16	78	3	52	27	4	4	62	1.35
48284--48571	144	2.0	144	89	1	443	43	14	13	28	1.84
50143--50189	16	2.7	17	90	9	69	34	21	21	23	1.97
54256--54289	14	2.3	15	90	5	52	20	2	11	64	1.39
56610--56663	28	1.9	28	100	0	108	51	7	12	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58072--58136	16	4.1	16	93	0	112	56	21	12	9	1.63
58068--58142	10	7.7	10	68	21	52	57	20	12	10	1.64
61178--61229	24	2.2	24	100	0	104	26	23	11	38	1.89
62365--62441	23	3.5	23	79	11	81	14	27	24	33	1.94
63993--64074	32	2.6	32	86	1	112	31	20	15	31	1.94
65151--65225	21	3.7	21	89	3	100	32	18	18	30	1.95
65115--65242	59	2.2	59	85	5	170	34	14	19	31	1.92
66258--66305	23	2.0	24	84	4	62	22	14	6	56	1.61
66931--66967	2	18.5	2	100	0	74	48	0	0	51	1.00
67961--67994	16	2.1	17	88	5	52	35	0	0	64	0.94
68735--68883	60	2.5	60	81	4	176	45	5	17	31	1.71
69470--69497	2	14.0	2	100	0	56	50	0	0	50	1.00
72895--72931	8	4.6	8	96	0	65	48	2	35	13	1.57
78652--78700	24	2.1	23	92	3	80	51	34	14	0	1.43
78667--78703	19	1.9	19	94	0	65	51	35	13	0	1.41
80988--81287	150	2.0	150	100	0	600	32	16	17	34	1.92
84725--84754	3	10.0	3	100	0	60	66	0	0	33	0.92
90527--90576	21	2.4	21	100	0	100	18	26	4	52	1.63
93555--93595	17	2.4	17	100	0	82	41	12	21	24	1.87
93578--93635	27	2.1	27	100	0	116	51	12	13	22	1.74
95057--95179	24	5.1	24	88	3	176	25	13	20	41	1.88
101756--101832	36	2.2	36	83	4	95	45	12	9	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103234--103309	3	26.0	3	81	10	95	28	2	1	67	1.12
105353--105396	22	2.0	22	81	0	52	27	4	15	52	1.63
111191--111309	35	3.4	35	78	6	100	30	21	12	36	1.90
111207--111309	35	3.0	36	78	7	115	32	20	11	35	1.89
111558--111683	29	4.5	28	84	10	161	29	10	17	42	1.82
111549--111683	57	2.4	56	83	9	168	28	10	18	42	1.83
111644--111698	26	2.1	26	83	10	67	32	9	16	41	1.80
111749--112311	66	8.5	67	94	3	975	30	11	11	45	1.76
111749--112311	199	2.8	200	94	2	996	30	11	11	45	1.76
112532--112654	65	1.9	64	86	5	176	27	12	12	47	1.76
112596--112754	67	2.4	65	78	11	162	32	14	10	42	1.80
112885--112980	35	2.7	35	84	6	106	28	16	13	41	1.86
113232--113422	40	4.6	40	73	14	152	24	30	18	25	1.98
113261--113511	46	5.8	44	71	12	151	24	30	19	25	1.98
113315--113542	46	5.2	45	72	18	169	24	30	18	26	1.98
113221--113382	89	1.9	84	86	8	227	24	32	19	24	1.98
113232--113511	129	2.2	130	92	2	476	24	30	19	25	1.98
113262--113542	43	6.5	44	70	14	163	24	30	18	25	1.98
113232--113546	129	2.4	128	88	5	393	25	30	18	25	1.98
113713--113767	3	19.0	3	78	10	53	27	3	1	67	1.17

Tables:   1

The End!