Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002413.1 Hibiscus syriacus cultivar Beakdansim tig00004935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57794

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45--87
20
2.2
20
87
8
61
16
23
30
30
1.96
16424--16471
23
2.1
23
88
0
69
35
12
18
33
1.89
16511--17173
327
2.0
334
95
2
1205
38
11
8
42
1.70
17226--17288
23
2.7
23
87
0
81
38
19
4
38
1.73
18378--18420
20
2.3
18
85
14
61
20
16
11
51
1.75
18550--18595
20
2.3
20
89
10
76
17
17
10
54
1.70
24743--24817
29
2.6
29
93
2
125
16
26
37
20
1.93
29567--29619
22
2.2
25
83
12
67
45
3
5
45
1.45
29689--29727
21
1.9
21
89
5
62
71
0
5
23
1.05
29688--29732
20
2.2
20
80
7
56
68
0
4
26
1.08
31642--31693
23
2.5
20
75
22
52
53
1
0
44
1.11
31583--31685
25
4.1
25
67
22
65
50
0
0
48
1.07
31649--31701
12
4.6
12
79
6
56
54
1
0
43
1.11
31763--31839
8
10.7
7
71
12
50
49
0
0
50
1.00
31731--31809
29
2.4
34
78
18
87
48
0
1
50
1.08
31776--31855
35
2.4
33
73
19
76
53
0
0
46
1.00
31777--31849
23
3.1
23
82
5
76
52
0
0
47
1.00
31805--31852
23
2.1
23
92
0
78
56
0
0
43
0.99
31770--31852
43
1.9
43
80
9
98
51
0
0
48
1.00
31938--32001
26
2.8
21
72
20
56
59
0
0
40
0.97
48800--48856
23
2.5
23
97
0
105
45
19
21
14
1.85
49763--49801
14
2.8
14
96
0
69
30
5
38
25
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50828--50863
13
2.8
13
84
16
56
80
0
0
19
0.71
53409--53486
34
2.3
35
90
2
122
29
1
28
41
1.64
53408--53493
35
2.5
34
88
1
127
29
1
27
41
1.63
53872--53919
14
3.5
13
76
18
53
39
12
0
47
1.41
54110--54144
17
2.0
18
94
5
63
22
25
11
40
1.88

Tables:   1

The End!