Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002414.1 Hibiscus syriacus cultivar Beakdansim tig00004936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131910
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:505 original size:20 final size:22
Alignment explanation
Indices: 480--526 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
470 CTACACGGTC
*
480 CTTCGA-CAAATCT-TGTGGCA
1 CTTCGATCAAATCTACGTGGCA
*
500 CTTCGATCATATCTACGTGGCA
1 CTTCGATCAAATCTACGTGGCA
522 CTTCG
1 CTTCG
527 TGCAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 6 0.26
22 11 0.48
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (22 bp):
CTTCGATCAAATCTACGTGGCA
Found at i:1469 original size:24 final size:24
Alignment explanation
Indices: 1441--1486 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
1431 TTCTACTTCA
1441 TTGGTTATTAGAAGAAAGGTTACT
1 TTGGTTATTAGAAGAAAGGTTACT
*
1465 TTGGTTATTAGAAGGAAGGTTA
1 TTGGTTATTAGAAGAAAGGTTA
1487 TTAAATAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.28, T:0.37
Consensus pattern (24 bp):
TTGGTTATTAGAAGAAAGGTTACT
Found at i:5465 original size:18 final size:18
Alignment explanation
Indices: 5442--5489 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
5432 ATATGAAATT
*
5442 TGTCCCGAATGACAACTA
1 TGTCCCGAAGGACAACTA
*
5460 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACAACTA
*
5478 TGTCCCAAAGGA
1 TGTCCCGAAGGA
5490 TCACATATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACAACTA
Found at i:5759 original size:15 final size:15
Alignment explanation
Indices: 5739--5767 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
5729 GGCTCGTAGC
5739 TTCTTATCACATAAT
1 TTCTTATCACATAAT
5754 TTCTTATCACATAA
1 TTCTTATCACATAA
5768 CTCATATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (15 bp):
TTCTTATCACATAAT
Found at i:8217 original size:24 final size:25
Alignment explanation
Indices: 8157--8230 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
8147 GAGCCGAGAG
* * * *
8157 TTCTACGTGATCCTTCGGGACAAAT
1 TTCTACGCGGTCCTTCGAGATAAAT
*
8182 TTCTACGTGGTCCTTCGAGATAAAT
1 TTCTACGCGGTCCTTCGAGATAAAT
*
8207 TT-TACGCGGTCTTTCGAGATAAAT
1 TTCTACGCGGTCCTTCGAGATAAAT
8231 CTATGTGGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 20 0.45
25 24 0.55
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (25 bp):
TTCTACGCGGTCCTTCGAGATAAAT
Found at i:9957 original size:14 final size:15
Alignment explanation
Indices: 9933--9962 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
9923 CTTTTTTTTC
9933 TTTTAATTTTATTTA
1 TTTTAATTTTATTTA
9948 TTTTAA-TTTATTTA
1 TTTTAATTTTATTTA
9962 T
1 T
9963 GGTAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTAATTTTATTTA
Found at i:11159 original size:32 final size:28
Alignment explanation
Indices: 11123--11182 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 28
11113 AAAGATTTAA
11123 TTAAAAATATAAAGATATTATTATAATTATTT
1 TTAAAAATAT-AA-A-ATTATTATAA-TATTT
*
11155 TTAAATATATAAAATTATTATAATATTT
1 TTAAAAATATAAAATTATTATAATATTT
11183 AGATAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 5 0.19
29 10 0.37
30 1 0.04
31 2 0.07
32 9 0.33
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
TTAAAAATATAAAATTATTATAATATTT
Found at i:12854 original size:107 final size:104
Alignment explanation
Indices: 12665--12895 Score: 293
Period size: 107 Copynumber: 2.2 Consensus size: 104
12655 CGTGTTTTTC
* * * * * *
12665 AATGTATTAATTACTTGGTGATATTTACATAGCACAGATGAGAAAATGCCAATGTATTATATTTC
1 AATGTATTAATTACTTGGTGATAATTAAAGAACACAGATGAGAAAATGACAATATATTATATTTC
* *
12730 AATGTATGGTATACCTACTAATTTCCACTTTACACTAATAT
66 AAAGTATAGTATACCTACTAATTTCCACTTT--ACTAATAT
* * *
12771 AGTAGTATTAATTACTTGGTGATAATTAAAGAACATAGATTAGAAAATGACAATATATTATATTT
1 AAT-GTATTAATTACTTGGTGATAATTAAAGAACACAGATGAGAAAATGACAATATATTATATTT
* * *
12836 CAAAGTCTAGTGTACCTACTAATTTCCACTTTTCTAATAT
65 CAAAGTATAGTATACCTACTAATTTCCACTTTACTAATAT
*
12876 AATGT-TTGATTACTTGGTGA
1 AATGTATTAATTACTTGGTGA
12896 AGGGAATGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
103 14 0.13
104 2 0.02
105 9 0.08
106 2 0.02
107 81 0.75
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (104 bp):
AATGTATTAATTACTTGGTGATAATTAAAGAACACAGATGAGAAAATGACAATATATTATATTTC
AAAGTATAGTATACCTACTAATTTCCACTTTACTAATAT
Found at i:22179 original size:18 final size:17
Alignment explanation
Indices: 22152--22187 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22142 TACTTTTTGA
22152 AATTTAGTTTATATATT
1 AATTTAGTTTATATATT
*
22169 AATTATAGTTTGTATATT
1 AATT-TAGTTTATATATT
22187 A
1 A
22188 TAAATTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (17 bp):
AATTTAGTTTATATATT
Found at i:22896 original size:27 final size:23
Alignment explanation
Indices: 22835--22889 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
22825 ACAGCAACCG
*
22835 ACAAGCATCGTTGTATCGATTCA
1 ACAAGCATCGTTGCATCGATTCA
*
22858 GCAAGCATCGTTGCATCGATTCA
1 ACAAGCATCGTTGCATCGATTCA
22881 ACAAGCATC
1 ACAAGCATC
22890 ATGCGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
ACAAGCATCGTTGCATCGATTCA
Found at i:24332 original size:63 final size:63
Alignment explanation
Indices: 24265--24456 Score: 330
Period size: 63 Copynumber: 3.0 Consensus size: 63
24255 CCCCTTGCAA
* * *
24265 AAAAAACCATGGCTAGTTTACATTAAATGCTTCTGATAGTATATCATTTACATCAACAACAAT
1 AAAAAACCAGGGTTAGTTTACATTAAATGCTTCTGAAAGTATATCATTTACATCAACAACAAT
* * *
24328 AAAAAACTAGGGTTAGTTTACATTAAATACTTCTGACAGTATATCATTTACATCAACAACAAT
1 AAAAAACCAGGGTTAGTTTACATTAAATGCTTCTGAAAGTATATCATTTACATCAACAACAAT
24391 AAAAAACCAGGGTTAGTTTACATTAAATGCTTCTGAAAGTATATCATTTACATCAACAACAAT
1 AAAAAACCAGGGTTAGTTTACATTAAATGCTTCTGAAAGTATATCATTTACATCAACAACAAT
24454 AAA
1 AAA
24457 CTAGTATATC
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 121 1.00
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (63 bp):
AAAAAACCAGGGTTAGTTTACATTAAATGCTTCTGAAAGTATATCATTTACATCAACAACAAT
Found at i:24465 original size:31 final size:31
Alignment explanation
Indices: 24428--24589 Score: 270
Period size: 31 Copynumber: 5.2 Consensus size: 31
24418 TGCTTCTGAA
*
24428 AGTATATCATTTACATCAACAACAATAAACT
1 AGTATATCATTTACATCAACAACAATAAACC
*
24459 AGTATATCATTTACATCAACAATAATAAACC
1 AGTATATCATTTACATCAACAACAATAAACC
*
24490 AGTATATCATTTACATCAACAATAATAAACC
1 AGTATATCATTTACATCAACAACAATAAACC
* *
24521 AATATATCATTTACATCAACAGCAATAAACC
1 AGTATATCATTTACATCAACAACAATAAACC
*
24552 AGTATATCATTTACATCAACAGCAATAAACC
1 AGTATATCATTTACATCAACAACAATAAACC
24583 AGTATAT
1 AGTATAT
24590 ATATATCAAG
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 125 1.00
ACGTcount: A:0.48, C:0.20, G:0.04, T:0.28
Consensus pattern (31 bp):
AGTATATCATTTACATCAACAACAATAAACC
Found at i:24826 original size:6 final size:6
Alignment explanation
Indices: 24815--25015 Score: 145
Period size: 6 Copynumber: 33.8 Consensus size: 6
24805 GTTTCGAATA
* * * * *
24815 GTTTGG GTTTGG GTTTGG GTTCGG ATTCGG GTTTAG GTTTGG GTTTAG
1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG
* ** * ** *
24863 GTTTAG GTTTGG GTTAAG GTTTAG GTTTGG ACTTGG GTTTGG GCTTGG
1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG
* * * * ** * *
24911 GCTCGG GTTCGG GTTCGG GTTTGG G-TTCA GTTTGA G-TTCG GTTTGG
1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG
* * * * * *
24957 GTTTGG GTTTAG GTTTGG GTTTAG GTTTGG GATTGG ATTTAG GTTAGG
1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG
*
25005 GTTAGG GTTTG
1 GTTTGG GTTTG
25016 AGATAGGGGT
Statistics
Matches: 155, Mismatches: 38, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
5 6 0.04
6 149 0.96
ACGTcount: A:0.08, C:0.05, G:0.43, T:0.44
Consensus pattern (6 bp):
GTTTGG
Found at i:25323 original size:101 final size:101
Alignment explanation
Indices: 25143--25355 Score: 340
Period size: 101 Copynumber: 2.1 Consensus size: 101
25133 TAAGGATTTG
* *
25143 GGGAAGAACACGGATGAATTTGTGTGTTTGATCGAAAAAAAACATGAAATGGTTTGGGTTTCGGT
1 GGGATGAACACGGATGAATTTGGGTGTTTGATCG-AAAAAAACATGAAATGGTTTGGGTTTCGGT
25208 GTTTTTGAAGATCAAATGAGGGTTTTGGGAAAGAA-T
65 GTTTTTGAAGATCAAATGAGGGTTTTGGGAAAGAACT
* *
25244 TGGATGAACACGGATGAATATTTGGGTGTTTGATCG-AAAAAACATGAAATGGTTTGTGTTTCGG
1 GGGATGAACACGGATG-A-ATTTGGGTGTTTGATCGAAAAAAACATGAAATGGTTTGGGTTTCGG
*
25308 TGTTTTTGAAGATCAAATGAGGGTTTTGGGGAAGAACT
64 TGTTTTTGAAGATCAAATGAGGGTTTTGGGAAAGAACT
25346 GGGATGAACA
1 GGGATGAACA
25356 AATAAAGAAC
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
101 76 0.74
102 11 0.11
103 16 0.16
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (101 bp):
GGGATGAACACGGATGAATTTGGGTGTTTGATCGAAAAAAACATGAAATGGTTTGGGTTTCGGTG
TTTTTGAAGATCAAATGAGGGTTTTGGGAAAGAACT
Found at i:25384 original size:123 final size:125
Alignment explanation
Indices: 25245--25491 Score: 374
Period size: 124 Copynumber: 2.0 Consensus size: 125
25235 GGAAAGAATT
* * * *
25245 GGATGAACACGGATGAATATTTGGGTGTTTGATCG-AAAAAACATG-AAATGGTTTGTGTTTCGG
1 GGATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAAACACGAAAATAGTTTG-GTTTCGG
* *
25308 TGTTTTTGAAGATCAAATGAGGGTTTT-GGGGAAGAACTGGGATGAACAAATAAAGAACAC
65 TGTTTTTGAAAATCAAAGGAGGGTTTTGGGGGAAGAACTGGGATGAACAAATAAAGAACAC
* *
25368 GGATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAAACACGAAAATATTTTGGTTTTGGT
1 GGATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAAACACGAAAATAGTTTGGTTTCGGT
* *
25433 GTTTTTGAAAATTAAAGGAGGGTTTTGGGGGAAGAACTGGGATGAACAAATGAAGAACA
66 GTTTTTGAAAATCAAAGGAGGGTTTTGGGGGAAGAACTGGGATGAACAAATAAAGAACA
25492 TAGATGAATT
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
123 33 0.30
124 39 0.35
125 39 0.35
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.28
Consensus pattern (125 bp):
GGATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAAACACGAAAATAGTTTGGTTTCGGT
GTTTTTGAAAATCAAAGGAGGGTTTTGGGGGAAGAACTGGGATGAACAAATAAAGAACAC
Found at i:25498 original size:125 final size:123
Alignment explanation
Indices: 25246--25499 Score: 366
Period size: 125 Copynumber: 2.0 Consensus size: 123
25236 GAAAGAATTG
* * * *
25246 GATGAACACGGATGAATATTTGGGTGTTTGATCGAAAAAACATGAAATGGTTTGTGTTTCGGTGT
1 GATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAACACGAAATAGTTTGTGTTTCGGTGT
* * *
25311 TTTTGAAGATCAAATGAGGGTTTTGGGGAAGAACTGGGATGAACAAATAAAGAACACG
66 TTTTGAAAATCAAAGGAGGGTTTTGGGGAAGAACTGGGATGAACAAATAAAGAACACA
* *
25369 GATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAAACACGAAAATATTTTG-GTTTTGGT
1 GATGAACACGAATGAATATTTGGGCGTTTGATCG-AAAAAACACG-AAATAGTTTGTGTTTCGGT
* * *
25433 GTTTTTGAAAATTAAAGGAGGGTTTTGGGGGAAGAACTGGGATGAACAAATGAAGAACATA
64 GTTTTTGAAAATCAAAGGAGGGTTTT-GGGGAAGAACTGGGATGAACAAATAAAGAACACA
25494 GATGAA
1 GATGAA
25500 TTTCTAGAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
123 32 0.28
124 39 0.34
125 45 0.39
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.28
Consensus pattern (123 bp):
GATGAACACGAATGAATATTTGGGCGTTTGATCGAAAAAACACGAAATAGTTTGTGTTTCGGTGT
TTTTGAAAATCAAAGGAGGGTTTTGGGGAAGAACTGGGATGAACAAATAAAGAACACA
Found at i:25797 original size:61 final size:61
Alignment explanation
Indices: 25691--25830 Score: 192
Period size: 61 Copynumber: 2.3 Consensus size: 61
25681 GTCTCCTAGT
* *
25691 TTTAAA-TTTATTCAATTTAGTCCAAAGTTAATGATGCAATATATTAATTTAAGCTTCATA
1 TTTAAATTTTATTCAATTTAGTCCAAAGTTAATGATACAATATATTAATTTAAGCTTAATA
* * * * * *
25751 TTTCAATTTTATTCAATTTAGTCCAAATTTAATGTTATAGTTTATTAATTTAAGCTTAATA
1 TTTAAATTTTATTCAATTTAGTCCAAAGTTAATGATACAATATATTAATTTAAGCTTAATA
*
25812 TTTAAATTTTTTTCAATTT
1 TTTAAATTTTATTCAATTT
25831 GATCCTTATA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
60 5 0.07
61 64 0.93
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (61 bp):
TTTAAATTTTATTCAATTTAGTCCAAAGTTAATGATACAATATATTAATTTAAGCTTAATA
Found at i:26147 original size:18 final size:18
Alignment explanation
Indices: 26124--26464 Score: 171
Period size: 18 Copynumber: 19.2 Consensus size: 18
26114 AACTTTTCAA
26124 TATATAGTTTATATATAC
1 TATATAGTTTATATATAC
26142 TATATAGTTTATATATA-
1 TATATAGTTTATATATAC
** *
26159 T-TA-A-TGAACTATATAA
1 TATATAGTTTA-TATATAC
26175 TATATAGTTTATATATAC
1 TATATAGTTTATATATAC
*
26193 CATATA-TTATATAGGTTATA-
1 TATATAGTT-TATA---TATAC
* ** *
26213 TATACTAATGCACTATATAA
1 TATA-TAGTTTA-TATATAC
*
26233 TATATAGTTTGTATATAC
1 TATATAGTTTATATATAC
* * *
26251 CATATACTATATAGGT-TA-
1 TATATAGTTTATA--TATAC
* **
26269 TATACTAATGAACTATATA-
1 TATA-TAGTTTA-TATATAC
26288 -ATATAGTTTATATATAC
1 TATATAGTTTATATATAC
** *
26305 TA-AT-GAAATATATATAA
1 TATATAG-TTTATATATAC
*
26322 TGTATAGTTTATATATAC
1 TATATAGTTTATATATAC
* *
26340 CATATAGTTTATATATAT
1 TATATAGTTTATATATAC
26358 TATATAGTTTATATATAC
1 TATATAGTTTATATATAC
***
26376 TA-ATAAACTATATA-A-
1 TATATAGTTTATATATAC
*
26391 TGTATAGTTTTATATATAC
1 TATATAG-TTTATATATAC
*
26410 CATATAGTTTATATATAC
1 TATATAGTTTATATATAC
* *
26428 TA-AT-G--AACTATATAA
1 TATATAGTTTA-TATATAC
26443 TATATAGTTTATATATAC
1 TATATAGTTTATATATAC
26461 TATA
1 TATA
26465 GTATAAATTA
Statistics
Matches: 240, Mismatches: 51, Indels: 64
0.68 0.14 0.18
Matches are distributed among these distances:
14 3 0.01
15 16 0.07
16 17 0.07
17 38 0.16
18 122 0.51
19 24 0.10
20 10 0.04
21 7 0.03
22 3 0.01
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (18 bp):
TATATAGTTTATATATAC
Found at i:26212 original size:58 final size:58
Alignment explanation
Indices: 26136--26460 Score: 302
Period size: 58 Copynumber: 6.0 Consensus size: 58
26126 TATAGTTTAT
* *
26136 ATATACTATATAGTTTATATATATTAATGAACTATATAATATATAGTTTATATATACC
1 ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATACC
* * *
26194 ATATATTATATAGGTTATATATACTAATGCACTATATAATATATAGTTTGTATATACC
1 ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATACC
* *
26252 ATATACTATATAG-GT-TATATACTAATGAACTATAT-A-ATATAGTTTATATATA-C
1 ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATACC
* * * * * ** **
26305 -TA-ATGAAATA-TATATAATGTA-TAGTTTA-TATATACCATATAG--T-T-TAT---
1 ATATATTATATAGTTTAT-ATATACTAATGAACTATATAATATATAGTTTATATATACC
* *
26352 ATATATTATATAGTTTATATATACTAATAAACTATATAATGTATAGTTTTATATATACC
1 ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAG-TTTATATATACC
26411 -------ATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATAC
1 ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATAC
26461 TATAGTATAA
Statistics
Matches: 219, Mismatches: 30, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
48 2 0.01
49 13 0.06
50 9 0.04
51 34 0.16
52 44 0.20
53 11 0.05
54 16 0.07
55 2 0.01
56 22 0.10
57 1 0.00
58 65 0.30
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (58 bp):
ATATATTATATAGTTTATATATACTAATGAACTATATAATATATAGTTTATATATACC
Found at i:26396 original size:26 final size:26
Alignment explanation
Indices: 26358--26448 Score: 78
Period size: 26 Copynumber: 3.5 Consensus size: 26
26348 TTATATATAT
*
26358 TATATAGTTTATATATACTAATAAAC
1 TATATAATTTATATATACTAATAAAC
* * *
26384 TATATAATGTATAGT-T-TTATATATAC
1 TATATAATTTATA-TATACTA-ATAAAC
* * *
26410 CATATAGTTTATATATACTAATGAAC
1 TATATAATTTATATATACTAATAAAC
*
26436 TATATAATATATA
1 TATATAATTTATA
26449 GTTTATATAT
Statistics
Matches: 48, Mismatches: 13, Indels: 8
0.70 0.19 0.12
Matches are distributed among these distances:
25 3 0.06
26 42 0.88
27 3 0.06
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (26 bp):
TATATAATTTATATATACTAATAAAC
Found at i:26406 original size:19 final size:20
Alignment explanation
Indices: 26384--26432 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
26374 ACTAATAAAC
26384 TATATAATGTATAGTTT-TA
1 TATATAATGTATAGTTTATA
***
26403 TATATACCATATAGTTTATA
1 TATATAATGTATAGTTTATA
26423 TATACTAATG
1 TATA-TAATG
26433 AACTATATAA
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
19 14 0.64
20 6 0.27
21 2 0.09
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (20 bp):
TATATAATGTATAGTTTATA
Found at i:26459 original size:20 final size:20
Alignment explanation
Indices: 26312--26726 Score: 108
Period size: 20 Copynumber: 21.4 Consensus size: 20
26302 TACTAATGAA
*
26312 ATATATATAATGTATAG-TT
1 ATATATATAATATATAGTTT
**
26331 -TATATATACCATATAGTTT
1 ATATATATAATATATAGTTT
26350 ATATATAT--TATATAGTTT
1 ATATATATAATATATAGTTT
26368 ATATATACT-A-ATA-A----
1 ATATATA-TAATATATAGTTT
* *
26382 A-CTATATAATGTATAGTTT
1 ATATATATAATATATAGTTT
**
26401 -TATATATACCATATAG-TT
1 ATATATATAATATATAGTTT
*
26419 -TATATATACTA-AT-G---
1 ATATATATAATATATAGTTT
26433 A-ACTATATAATATATAGTTT
1 ATA-TATATAATATATAGTTT
**
26453 ATATATACT-ATAGTATAAATT
1 ATATATA-TAATA-TATAGTTT
* **
26474 ATATTATATAGTATATA-AAT
1 ATA-TATATAATATATAGTTT
26494 ATCA-ACTATAATATATAGTTT
1 AT-ATA-TATAATATATAGTTT
* * * *
26515 ATATGGTTTTTATATATAGTTC
1 ATAT--ATATAATATATAGTTT
* *
26537 ATATGTA-AAT-TATA--CT
1 ATATATATAATATATAGTTT
*
26553 ATATA-GT-ATATATAGTTT
1 ATATATATAATATATAGTTT
*
26571 ATATATATAATATATAGTAT
1 ATATATATAATATATAGTTT
*
26591 ATAAATATAA-ACTATAGTATGT
1 ATATATATAATA-TATAGT-T-T
*
26613 AGTATATAAATATAAACTATAGTTT
1 A-TATAT--ATA-ATA-TATAGTTT
* *
26638 ATATATATAATATATACTAT
1 ATATATATAATATATAGTTT
* * * *
26658 ATAAATAGT-TTATATAGCTC
1 ATATATA-TAATATATAGTTT
* *
26678 ACTA-ATA-AACTATATAGGTC
1 A-TATATATAA-TATATAGTTT
*
26698 ATATGTA-AACTATATAGTTT
1 ATATATATAA-TATATAGTTT
26718 ATATATATA
1 ATATATATA
26727 GTTCATATGT
Statistics
Matches: 295, Mismatches: 51, Indels: 98
0.66 0.11 0.22
Matches are distributed among these distances:
12 1 0.00
13 5 0.02
14 4 0.01
15 11 0.04
16 11 0.04
17 3 0.01
18 52 0.18
19 24 0.08
20 107 0.36
21 26 0.09
22 27 0.09
23 4 0.01
24 5 0.02
25 5 0.02
26 2 0.01
27 8 0.03
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (20 bp):
ATATATATAATATATAGTTT
Found at i:26532 original size:158 final size:156
Alignment explanation
Indices: 26099--26530 Score: 422
Period size: 156 Copynumber: 2.7 Consensus size: 156
26089 GCAATTCAGG
* **
26099 TTATATATACTAATGAACT-TTTCAATATATAGTTTATATATACTATATAGTTTATATATATTA-
1 TTATATATACTAATGAACTATAT-AATATATAGTTTATATATACTATATA-TAAATATATATTAT
* * * **
26162 ATGAACTATATAATATAT-AGTTTATATATACCATATATTATATAGG-TTATATATACTAATGCA
64 AT--AGTATATAA-ATATCA--ATATATATA-TATATATTATAT-GGTTTATATATACTAATAAA
*
26225 CTATATAATATATAGTTTGTATATACCATATACTA
122 CTATATAATATATAGTTTATATATACCATATACTA
26260 TATAGGTTATATACTAATGAACTATAT-A-ATATAGTTTATATATACTA-ATGA-AATATATATA
1 T-TA---TATATACTAATGAACTATATAATATATAGTTTATATATACTATAT-ATAA-ATATATA
* * * * * * *
26321 ATGTATAGTTTATATATA-CCATATAGTTTATATATATTATATAGTTTATATATACTAATAAACT
60 TTATATAGTATATAAATATCAATATA-TATATATATATTATATGGTTTATATATACTAATAAACT
* *
26385 ATATAATGTATAGTTTTATATATACCATATAGT-
124 ATATAATATATAG-TTTATATATACCATATACTA
26418 TTATATATACTAATGAACTATATAATATATAGTTTATATATACTATAGTATAAAT-TATATTATA
1 TTATATATACTAATGAACTATATAATATATAGTTTATATATACTATA-TATAAATATATATTATA
*
26482 TAGTATATAAATATCAACTATA-ATATATAGT-TTATATGGTTTTTATATA
65 TAGTATATAAATATCAA-TATATATATATA-TATTATATGGTTTATATATA
26531 TAGTTCATAT
Statistics
Matches: 225, Mismatches: 26, Indels: 45
0.76 0.09 0.15
Matches are distributed among these distances:
154 20 0.09
155 1 0.00
156 59 0.26
157 10 0.04
158 52 0.23
159 20 0.09
160 3 0.01
161 7 0.03
162 12 0.05
163 22 0.10
164 1 0.00
165 16 0.07
166 2 0.01
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (156 bp):
TTATATATACTAATGAACTATATAATATATAGTTTATATATACTATATATAAATATATATTATAT
AGTATATAAATATCAATATATATATATATATTATATGGTTTATATATACTAATAAACTATATAAT
ATATAGTTTATATATACCATATACTA
Found at i:26562 original size:7 final size:6
Alignment explanation
Indices: 26547--26660 Score: 61
Period size: 7 Copynumber: 17.7 Consensus size: 6
26537 ATATGTAAAT
* *
26547 TATACTA TATAGTA TATATA GTTTATA TATATA -ATATA TAGTATA TAAATA
1 TATA-TA TATA-TA TATATA -TATATA TATATA TATATA TA-TATA TATATA
* * * * *
26598 TAAACTA TAGTATG TAGTATA TAAATA TAAACTA TAGTTTA TATATA TA-ATA
1 TATA-TA TA-TATA TA-TATA TATATA TATA-TA TA-TATA TATATA TATATA
26650 TATACTA TATA
1 TATA-TA TATA
26661 AATAGTTTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
5 10 0.11
6 28 0.32
7 48 0.55
8 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (6 bp):
TATATA
Found at i:26563 original size:34 final size:36
Alignment explanation
Indices: 26525--26660 Score: 101
Period size: 34 Copynumber: 4.0 Consensus size: 36
26515 ATATGGTTTT
*
26525 TATATATAGTTCATATGTA-AAT-TATACTATATAG
1 TATATATAGTTCATATATATAATATATACTATATAG
* *
26559 TATATATAGTTTATATATATAATATATAGTATATA-
1 TATATATAGTTCATATATATAATATATACTATATAG
* ** * *
26594 AATATA-AACT-ATAGTATGTAGTATATA--A-ATA-
1 TATATATAGTTCATA-TATATAATATATACTATATAG
* *
26625 TAAACTATAGTTTATATATATAATATATACTATATA
1 TATA-TATAGTTCATATATATAATATATACTATATA
26661 AATAGTTTAT
Statistics
Matches: 79, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
31 5 0.06
32 3 0.04
33 16 0.20
34 33 0.42
35 9 0.11
36 13 0.16
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (36 bp):
TATATATAGTTCATATATATAATATATACTATATAG
Found at i:26566 original size:9 final size:9
Alignment explanation
Indices: 26552--26593 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
26542 TAAATTATAC
26552 TATATAGTA
1 TATATAGTA
26561 TATATAGTTTA
1 TATATAG--TA
26572 TATATA-TAA
1 TATATAGT-A
26581 TATATAGTA
1 TATATAGTA
26590 TATA
1 TATA
26594 AATATAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 1 0.03
9 19 0.66
10 1 0.03
11 8 0.28
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (9 bp):
TATATAGTA
Found at i:26606 original size:27 final size:27
Alignment explanation
Indices: 26576--26671 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 27
26566 AGTTTATATA
26576 TATAATATATAGTATATAAATATAAAC
1 TATAATATATAGTATATAAATATAAAC
* *
26603 TATAGTATGTAGTATATAAATATAAAC
1 TATAATATATAGTATATAAATATAAAC
* * *
26630 TATAGTTTATA-TATAT-AATATATAC
1 TATAATATATAGTATATAAATATAAAC
* *
26655 TAT-ATAAATAGTTTATA
1 TATAATATATAGTATATA
26672 TAGCTCACTA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 4 0.07
25 15 0.26
26 5 0.09
27 34 0.59
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (27 bp):
TATAATATATAGTATATAAATATAAAC
Found at i:26673 original size:2 final size:2
Alignment explanation
Indices: 26282--26660 Score: 65
Period size: 2 Copynumber: 181.0 Consensus size: 2
26272 ACTAATGAAC
* *
26282 TA TA TA -A TA TA GTT TA TA TA TA CTA -A TGA AA TA TA TA TA -A
1 TA TA TA TA TA TA -TA TA TA TA TA -TA TA T-A TA TA TA TA TA TA
* * * *
26322 TG TA TA GTT TA TA TA TA CCA TA TA GTT TA TA TA TA T- TA TA TA
1 TA TA TA -TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA
* * * *
26364 GTT TA TA TA TA CTA -A TA AA CTA TA TA -A TG TA TA GT- TT TA TA
1 -TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA
* *
26405 TA TA CCA TA TA GTT TA TA TA TA CTA -A TGA -A CTA TA TA -A TA TA
1 TA TA -TA TA TA -TA TA TA TA TA -TA TA T-A TA -TA TA TA TA TA TA
* *
26447 TA GTT TA TA TA TA CTA TA GTA TA AA T- TA TA T- TA TA TA GTA TA
1 TA -TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA
* * * * *
26489 TA AA TA TCA -A CTA TA -A TA TA TA GTT TA TA TGG TT TT TA TA TA
1 TA TA TA T-A TA -TA TA TA TA TA TA -TA TA TA T-A TA TA TA TA TA
* * *
26531 TA GT- TCA TA TG TA AA T- TA TA CTA TA TA GTA TA TA TA GTT TA TA
1 TA -TA T-A TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA -TA TA TA
* * *
26574 TA TA TA -A TA TA TA GTA TA TA AA TA TA AA CTA TA GTA TG TA GTA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA -TA TA TA -TA
* * *
26617 TA TA AA TA TA AA CTA TA GTT TA TA TA TA TA -A TA TA TA CTA TA
1 TA TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA
26659 TA
1 TA
26661 AATAGTTTAT
Statistics
Matches: 272, Mismatches: 52, Indels: 106
0.63 0.12 0.25
Matches are distributed among these distances:
1 18 0.07
2 207 0.76
3 47 0.17
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (2 bp):
TA
Found at i:26806 original size:20 final size:20
Alignment explanation
Indices: 26783--26862 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
26773 ATATGTAAAC
*
26783 TATAGTTAGAATATAAACTA
1 TATAGTTAGTATATAAACTA
*
26803 TATAGTTTA-TATGTAAAC--
1 TATAG-TTAGTATATAAACTA
*
26821 TATAGCTAGTATATAAACTA
1 TATAGTTAGTATATAAACTA
*
26841 TATAGTTTA-TATGTAAACTA
1 TATAG-TTAGTATATAAACTA
26861 TA
1 TA
26863 GTTCATATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
17 2 0.04
18 13 0.27
20 29 0.59
21 5 0.10
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (20 bp):
TATAGTTAGTATATAAACTA
Found at i:26872 original size:20 final size:18
Alignment explanation
Indices: 26723--26870 Score: 102
Period size: 18 Copynumber: 7.7 Consensus size: 18
26713 AGTTTATATA
*
26723 TATAGTTCATATGTAAAC
1 TATAGTTTATATGTAAAC
*
26741 TATAGTTCATATGTAAATATCAAC
1 TATAGTTTATATG----TA--AAC
*
26765 TATATTTTATATGTAAAC
1 TATAGTTTATATGTAAAC
* *
26783 TATAG-TTAGAATATAAAC
1 TATAGTTTA-TATGTAAAC
26801 TATATAGTTTATATGTAAAC
1 --TATAGTTTATATGTAAAC
* *
26821 TATAG-CTAGTATATAAAC
1 TATAGTTTA-TATGTAAAC
26839 TATATAGTTTATATGTAAAC
1 --TATAGTTTATATGTAAAC
*
26859 TATAGTTCATAT
1 TATAGTTTATAT
26871 ATATAGTATA
Statistics
Matches: 104, Mismatches: 12, Indels: 28
0.72 0.08 0.19
Matches are distributed among these distances:
17 5 0.05
18 51 0.49
20 27 0.26
21 5 0.05
22 2 0.02
24 14 0.13
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (18 bp):
TATAGTTTATATGTAAAC
Found at i:26872 original size:38 final size:38
Alignment explanation
Indices: 26682--26882 Score: 202
Period size: 38 Copynumber: 5.3 Consensus size: 38
26672 TAGCTCACTA
* *
26682 ATAAACTATATAGGTCATATGTAAACTATA--TAGT-T
1 ATAAACTATATAGTTTATATGTAAACTATAGTTAGTAT
* *
26717 -TATA-TATATAGTTCATATGTAAACTATAGTTCATATGTAAAT
1 ATAAACTATATAGTTTATATGTAAACTATAG-T--TA-GT--AT
* *
26759 ATCAACTATAT--TTTATATGTAAACTATAGTTAGAAT
1 ATAAACTATATAGTTTATATGTAAACTATAGTTAGTAT
*
26795 ATAAACTATATAGTTTATATGTAAACTATAGCTAGTAT
1 ATAAACTATATAGTTTATATGTAAACTATAGTTAGTAT
26833 ATAAACTATATAGTTTATATGTAAACTATAGTTCA-TAT
1 ATAAACTATATAGTTTATATGTAAACTATAGTT-AGTAT
* *
26871 ATATAGTATATA
1 ATAAACTATATA
26883 AATATAAACT
Statistics
Matches: 140, Mismatches: 12, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
33 23 0.16
34 3 0.02
36 12 0.09
38 71 0.51
39 5 0.04
41 1 0.01
42 18 0.13
43 2 0.01
44 5 0.04
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.41
Consensus pattern (38 bp):
ATAAACTATATAGTTTATATGTAAACTATAGTTAGTAT
Found at i:26877 original size:31 final size:33
Alignment explanation
Indices: 26854--26920 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
26844 AGTTTATATG
26854 TAAACTATAGTTCATATATATAGTATATAAATA
1 TAAACTATAGTTCATATATATAGTATATAAATA
* *
26887 TAAACTATAGTTTATATAAATAGTATA-AAATA
1 TAAACTATAGTTCATATATATAGTATATAAATA
26919 TA
1 TA
26921 GTATATAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 7 0.22
33 25 0.78
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (33 bp):
TAAACTATAGTTCATATATATAGTATATAAATA
Found at i:26895 original size:20 final size:20
Alignment explanation
Indices: 26872--26944 Score: 92
Period size: 20 Copynumber: 3.4 Consensus size: 20
26862 AGTTCATATA
26872 TATAGTATATAAATATAAAC
1 TATAGTATATAAATATAAAC
*
26892 TATAGTTTATATAAATAGTATAAAA
1 TATAG--TATAT-AA-A-TATAAAC
26917 TATAGTATATAAATATAAAC
1 TATAGTATATAAATATAAAC
26937 TATAGTAT
1 TATAGTAT
26945 GTAGTATATA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
20 19 0.41
21 1 0.02
22 7 0.15
23 7 0.15
24 1 0.02
25 11 0.24
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (20 bp):
TATAGTATATAAATATAAAC
Found at i:26902 original size:27 final size:27
Alignment explanation
Indices: 26872--26974 Score: 98
Period size: 27 Copynumber: 4.1 Consensus size: 27
26862 AGTTCATATA
26872 TATAGTATATAAATATAAACTATAGTT
1 TATAGTATATAAATATAAACTATAGTT
* *
26899 TATA-TAAAT-AGTAT-AA--A-A---
1 TATAGTATATAAATATAAACTATAGTT
*
26917 TATAGTATATAAATATAAACTATAGTA
1 TATAGTATATAAATATAAACTATAGTT
* *
26944 TGTAGTATATAAATATAAACTATAATT
1 TATAGTATATAAATATAAACTATAGTT
26971 TATA
1 TATA
26975 TATTATATAG
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
18 4 0.07
19 4 0.07
20 4 0.07
21 3 0.05
22 1 0.02
23 1 0.02
24 3 0.05
25 4 0.07
26 4 0.07
27 31 0.53
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (27 bp):
TATAGTATATAAATATAAACTATAGTT
Found at i:26920 original size:25 final size:23
Alignment explanation
Indices: 26871--26931 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
26861 TAGTTCATAT
26871 ATATAGTATAT-AA-A-TATAAA
1 ATATAGTATATAAATAGTATAAA
*
26891 CTATAGTTTATATAAATAGTATAAA
1 ATATAG--TATATAAATAGTATAAA
26916 ATATAGTATATAAATA
1 ATATAGTATATAAATA
26932 TAAACTATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 5 0.15
22 5 0.15
23 12 0.35
24 1 0.03
25 11 0.32
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (23 bp):
ATATAGTATATAAATAGTATAAA
Found at i:26923 original size:12 final size:13
Alignment explanation
Indices: 26884--26960 Score: 61
Period size: 13 Copynumber: 5.8 Consensus size: 13
26874 TAGTATATAA
26884 ATATAAACTATAGT
1 ATATAAA-TATAGT
*
26898 TTATATAA-ATAGT
1 ATATA-AATATAGT
26911 ATA-AAATATAGT
1 ATATAAATATAGT
*
26923 ATATAAATATA-A
1 ATATAAATATAGT
* *
26935 ACTATAGTATGTAGT
1 A-TATA-AATATAGT
26950 ATATAAATATA
1 ATATAAATATA
26961 AACTATAATT
Statistics
Matches: 49, Mismatches: 8, Indels: 13
0.70 0.11 0.19
Matches are distributed among these distances:
11 2 0.04
12 10 0.20
13 22 0.45
14 12 0.24
15 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.38
Consensus pattern (13 bp):
ATATAAATATAGT
Found at i:26960 original size:20 final size:20
Alignment explanation
Indices: 26906--27001 Score: 72
Period size: 20 Copynumber: 4.7 Consensus size: 20
26896 GTTTATATAA
26906 ATAGTATA-AAATATAGTAT
1 ATAGTATATAAATATAGTAT
*
26925 ATA-AATATAAACTATAGTAT
1 ATAGTATATAAA-TATAGTAT
* *
26945 GTAGTATATAAATATA-AACT
1 ATAGTATATAAATATAGTA-T
* *
26965 ATAATTTATATATTATATAGTAT
1 AT-A-GTATATA-AATATAGTAT
*
26988 ATACTATATAAATA
1 ATAGTATATAAATA
27002 GTTTATATAG
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
18 3 0.05
19 7 0.12
20 19 0.32
21 14 0.24
22 7 0.12
23 8 0.14
24 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (20 bp):
ATAGTATATAAATATAGTAT
Found at i:26981 original size:27 final size:27
Alignment explanation
Indices: 26910--27008 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
26900 ATATAAATAG
*
26910 TATAAAATATAGTATATAAATATAAAC
1 TATAATATATAGTATATAAATATAAAC
* *
26937 TATAGTATGTAGTATATAAATATAAAC
1 TATAATATATAGTATATAAATATAAAC
* * *
26964 TATAATTTATA-TATTATATAGTATATAC
1 TATAATATATAGTA-TATA-AATATAAAC
* *
26992 TAT-ATAAATAGTTTATA
1 TATAATATATAGTATATA
27009 TAGTTCACTA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.03
27 45 0.78
28 11 0.19
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.41
Consensus pattern (27 bp):
TATAATATATAGTATATAAATATAAAC
Found at i:27032 original size:24 final size:24
Alignment explanation
Indices: 26992--27054 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
26982 TAGTATATAC
* *
26992 TATATAAA-TAGTTTATATAGTTCA
1 TATATAAACTA-TATATATAGGTCA
27016 CTA-ATAAACTATATATATAGGTCA
1 -TATATAAACTATATATATAGGTCA
*
27040 TATGTAAACTATATA
1 TATATAAACTATATA
27055 GTTTACATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 2 0.06
24 27 0.82
25 4 0.12
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (24 bp):
TATATAAACTATATATATAGGTCA
Found at i:27063 original size:22 final size:22
Alignment explanation
Indices: 27038--27120 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 22
27028 ATATATAGGT
27038 CATATGTAAACTATATAGTTTA
1 CATATGTAAACTATATAGTTTA
27060 CATAT-TATATA-TATATAGTTTA
1 CATATGTA-A-ACTATATAGTTTA
* * * *
27082 TATAGTTTATAC-CTATAG-TT-
1 CATA-TGTAAACTATATAGTTTA
27102 CATATGTAAACTATATAGT
1 CATATGTAAACTATATAGT
27121 ATATATAGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 15
0.68 0.10 0.22
Matches are distributed among these distances:
19 5 0.11
20 8 0.17
21 4 0.09
22 26 0.55
23 2 0.04
24 2 0.04
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (22 bp):
CATATGTAAACTATATAGTTTA
Found at i:27092 original size:20 final size:20
Alignment explanation
Indices: 27049--27166 Score: 73
Period size: 22 Copynumber: 5.8 Consensus size: 20
27039 ATATGTAAAC
* *
27049 TATATAGTTTACATATTATATA
1 TATATAGTTTATATAGT-T-TA
27071 TATATAGTTTATATAGTTTA
1 TATATAGTTTATATAGTTTA
* **
27091 TACCTATAGTTCATAT-GTAAA
1 TA--TATAGTTTATATAGTTTA
*
27112 CTATATAGTATATATAGTTTA
1 -TATATAGTTTATATAGTTTA
* *
27133 CATATAGTATA-AGTTAGTTTA
1 TATATAGTTTATA--TAGTTTA
27154 TAT-T-GTTTATATA
1 TATATAGTTTATATA
27167 TAGTTTAAAT
Statistics
Matches: 77, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
18 2 0.03
19 5 0.06
20 26 0.34
21 16 0.21
22 28 0.36
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.48
Consensus pattern (20 bp):
TATATAGTTTATATAGTTTA
Found at i:27106 original size:42 final size:44
Alignment explanation
Indices: 27051--27132 Score: 109
Period size: 42 Copynumber: 1.9 Consensus size: 44
27041 ATGTAAACTA
*
27051 TATAGTTTACATAT-TATATA-TATATAGTTTATATAGTTTATACC
1 TATAGTTTACATATGTA-A-ACTATATAGTATATATAGTTTATACC
27095 TATAG-TT-CATATGTAAACTATATAGTATATATAGTTTA
1 TATAGTTTACATATGTAAACTATATAGTATATATAGTTTA
27133 CATATAGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
41 1 0.03
42 25 0.71
43 4 0.11
44 5 0.14
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.48
Consensus pattern (44 bp):
TATAGTTTACATATGTAAACTATATAGTATATATAGTTTATACC
Found at i:27293 original size:24 final size:22
Alignment explanation
Indices: 27257--27315 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
27247 TTAAACCATA
* *
27257 TATACTATATATATATATAAAAAC
1 TATACAATTTATAT-TA-AAAAAC
* *
27281 TATACAGTTTATATTAATAAAC
1 TATACAATTTATATTAAAAAAC
*
27303 TATATAATTTATA
1 TATACAATTTATA
27316 CAATCTATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 16 0.55
23 2 0.07
24 11 0.38
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (22 bp):
TATACAATTTATATTAAAAAAC
Found at i:27302 original size:22 final size:22
Alignment explanation
Indices: 27268--27315 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
27258 ATACTATATA
*
27268 TATATATAAAAACTATACAGTT
1 TATATATAAAAACTATACAATT
*
27290 TATAT-TAATAAACTATATAATT
1 TATATATAA-AAACTATACAATT
27312 TATA
1 TATA
27316 CAATCTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
TATATATAAAAACTATACAATT
Found at i:27397 original size:13 final size:11
Alignment explanation
Indices: 27362--27399 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
27352 ATATAAATTG
*
27362 TATAGTTTATA
1 TATAATTTATA
*
27373 TATAATTCATA
1 TATAATTTATA
27384 TATAATTTATA
1 TATAATTTATA
27395 TATAA
1 TATAA
27400 ACTATGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (11 bp):
TATAATTTATA
Found at i:27472 original size:2 final size:2
Alignment explanation
Indices: 27465--27573 Score: 73
Period size: 2 Copynumber: 54.0 Consensus size: 2
27455 TTTATACATG
* *
27465 AT AT AT AT A- AT TT AT AT A- AT AT AT AT AT AT AT AT AA ACT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
* * * *
27506 AT AGT TT AT AT AT AT A- AT AC AT AT ACT TT AT AT AT AA ACT AT
1 AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT
* *
27548 AT AGT TT AT AT -T AT TT AT AT AT AT AT
1 AT A-T AT AT AT AT AT AT AT AT AT AT AT
27574 TAGTTGTTTT
Statistics
Matches: 82, Mismatches: 16, Indels: 18
0.71 0.14 0.16
Matches are distributed among these distances:
1 4 0.05
2 73 0.89
3 5 0.06
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:27480 original size:9 final size:9
Alignment explanation
Indices: 27465--27530 Score: 62
Period size: 9 Copynumber: 7.0 Consensus size: 9
27455 TTTATACATG
27465 ATATATATA
1 ATATATATA
*
27474 ATTTATATA
1 ATATATATA
27483 ATATATAT-
1 ATATATATA
27491 ATATATATAA
1 ATATATAT-A
*
27501 ACTATATAGTTT
1 A-TATATA--TA
27513 ATATATATA
1 ATATATATA
*
27522 ATACATATA
1 ATATATATA
27531 CTTTATATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
8 8 0.17
9 24 0.51
10 1 0.02
11 12 0.26
12 1 0.02
13 1 0.02
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (9 bp):
ATATATATA
Found at i:27515 original size:22 final size:22
Alignment explanation
Indices: 27490--27558 Score: 99
Period size: 22 Copynumber: 3.2 Consensus size: 22
27480 ATAATATATA
27490 TATATATATAAACTATATAGTT
1 TATATATATAAACTATATAGTT
*
27512 TATATATATAATAC-ATATA-CT
1 TATATATATAA-ACTATATAGTT
27533 T-TATATATAAACTATATAGTT
1 TATATATATAAACTATATAGTT
27554 TATAT
1 TATAT
27559 TATTTATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 2 0.05
20 14 0.34
21 4 0.10
22 19 0.46
23 2 0.05
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (22 bp):
TATATATATAAACTATATAGTT
Found at i:27549 original size:42 final size:39
Alignment explanation
Indices: 27477--27573 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 39
27467 ATATATAATT
27477 TATATAATATATATATATATATAAACTATATAGTTTATA
1 TATATAATATATATATATATATAAACTATATAGTTTATA
*
27516 TATATAATACATATACTTTATATATAAACTATATAGTTTATA
1 TATATAAT--ATATA-TATATATATAAACTATATAGTTTATA
*
27558 T-TAT-TTATATATATAT
1 TATATAATATATATATAT
27574 TAGTTGTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
37 4 0.08
38 5 0.10
39 8 0.15
40 1 0.02
41 8 0.15
42 26 0.50
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.48
Consensus pattern (39 bp):
TATATAATATATATATATATATAAACTATATAGTTTATA
Found at i:28322 original size:216 final size:215
Alignment explanation
Indices: 27655--28772 Score: 1852
Period size: 216 Copynumber: 5.3 Consensus size: 215
27645 TTGATCCCTT
* *
27655 TGTGTTGTTTAATTTATTTAAATCTTTATTTGTAATTTCATATTTGTTTAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
* * *
27720 TTTTATTTGCATCTAAAATTGACC---C--A-AACTTATTACTATTTTTTAATTGGCCCATAACT
66 TTTTATTTGCATCTGAAATTGACCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAACT
* *
27779 TTTTAAATGGGTATAATTTAGTATTTTTTTGTATTAATTTGAACCTCACAATTTAAAATTATTTC
131 TTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTC
*
27844 AATTTGATCCCTCATCAATG
196 GATTTGATCCCTCATCAATG
27864 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
*
27929 TTTTATTTGCATCTGAAATTGACTCATACTT-TTACTTATTTCTATTTTTTAATTGGCACATAAC
66 TTTTATTTGCATCTGAAATTGAC-CATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAAC
** * *
27993 TTTTTAAAAAGGTATAATTTAGAAC-TTTTTGTATTAATTTCAACCTCAAAATTTAAAATTATTT
130 TTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTT
28057 CGATTTGATCCCTCATCAATG
195 CGATTTGATCCCTCATCAATG
* * *
28078 TGAGTTGTTTAATTTATTTAAATTTTTATTTTTAGTTTCATATTTGTTCAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
*
28143 TTTTATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAAC
66 TTTTATTTGCATCTGAAATTGA-CCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAAC
*
28208 TTTTTAAATGTGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTT
130 TTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTT
28273 CGATTTGATCCCTCATCAATG
195 CGATTTGATCCCTCATCAATG
* *
28294 TGTGTTGTTTAATTTATTTAAATTTTTATTTATAATTTTATATTTGTTCAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
*
28359 TTTTATTTGCATCTGAAATTGACC---C--A-TACTTATTTCTATTTTTTAATTGGACCATAACT
66 TTTTATTTGCATCTGAAATTGACCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAACT
28418 TTTTAAATGGGTATAATTTAGTAC-TTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTC
131 TTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTC
*
28482 GAATTGATCCCTCATCAATG
196 GATTTGATCCCTCATCAATG
* **
28502 TGTTTTGTTTAATTTATTTAAATTTTTATTTGTAATTTTGTATTTGTTCAATTTAGTCCTCCAAA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
*
28567 TTTTATTTGCATATGAAATTGATCCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAAC
66 TTTTATTTGCATCTGAAATTGA-CCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAAC
*
28632 TTTTTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTT
130 TTTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTT
28697 CGATTTGATCCCTCATCAATG
195 CGATTTGATCCCTCATCAATG
*
28718 TGTGTTGTTTAATTTATTTAAGTTTTTATTTGTAATTTCATATTTGTTCAATTTA
1 TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTA
28773 ATTCTTAAAT
Statistics
Matches: 849, Mismatches: 42, Indels: 29
0.92 0.05 0.03
Matches are distributed among these distances:
208 142 0.17
209 141 0.17
210 2 0.00
212 2 0.00
213 1 0.00
214 149 0.18
215 160 0.19
216 252 0.30
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (215 bp):
TGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAA
TTTTATTTGCATCTGAAATTGACCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAACT
TTTTAAATGGGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTC
GATTTGATCCCTCATCAATG
Found at i:28323 original size:12 final size:13
Alignment explanation
Indices: 28306--28338 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
28296 TGTTGTTTAA
28306 TTTATTTA-AATT
1 TTTATTTATAATT
28318 TTTATTTATAATT
1 TTTATTTATAATT
28331 TTATATTT
1 TT-TATTT
28339 GTTCAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 6 0.32
14 5 0.26
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTATTTATAATT
Found at i:28595 original size:424 final size:427
Alignment explanation
Indices: 27658--28772 Score: 1874
Period size: 424 Copynumber: 2.6 Consensus size: 427
27648 ATCCCTTTGT
* *
27658 GTTGTTTAATTTATTTAAATCTTTATTTGTAATTTCATATTTGTTTAATTTAGTCCTCCAAATTT
1 GTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAATTT
* * *
27723 TATTTGCATCTAAAATTGACCCAAAC---TT-ATTA---CTATTTTTTAATTGGCCCATAACTTT
66 TATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAACTTT
* * * *
27781 TTAAATGGGTATAATTTAGTATTTTTTTGTATTAATTTGAACCTCACAATTTAAAATTATTTCAA
131 TTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
27846 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGT
196 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGT
*
27911 TCAATTTAGTCCTCCAAATTTTATTTGCATCTGAAATTGACTCATACTTTTACTTATTTCTATTT
261 TCAATTTAGTCCTCCAAATTTTATTTGCATCTGAAATTGACTC--AC-TATACTTATTTCTATTT
27976 TTTAATTGGCACATAACTTTTTAAAAAGGTATAATTTAGAACTTTTTGTATTAATTTCAACCTCA
323 TTTAATTGGCACATAACTTTTTAAAAAGGTATAATTTAGAACTTTTTGTATTAATTTCAACCTCA
*
28041 AAATTTAAAATTATTTCGATTTGATCCCTCATCAATGTGA
388 AAATTTAAAATTATTTCGAATTGATCCCTCATCAATGTGA
* *
28081 GTTGTTTAATTTATTTAAATTTTTATTTTTAGTTTCATATTTGTTCAATTTAGTCCTCCAAATTT
1 GTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAATTT
28146 TATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAACTTT
66 TATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAACTTT
*
28211 TTAAATGTGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
131 TTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
* *
28276 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTATAATTTTATATTTGT
196 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGT
28341 TCAATTTAGTCCTCCAAATTTTATTTGCATCTGAAATTGAC-C-C-ATACTTATTTCTATTTTTT
261 TCAATTTAGTCCTCCAAATTTTATTTGCATCTGAAATTGACTCACTATACTTATTTCTATTTTTT
** * *
28403 AATTGG-ACCATAACTTTTTAAATGGGTATAATTTAGTACTTTTTGTATTAATTTCAACCTCACA
326 AATTGGCA-CATAACTTTTTAAAAAGGTATAATTTAGAACTTTTTGTATTAATTTCAACCTCAAA
*
28467 ATTTAAAATTATTTCGAATTGATCCCTCATCAATGTGT
390 ATTTAAAATTATTTCGAATTGATCCCTCATCAATGTGA
* **
28505 TTTGTTTAATTTATTTAAATTTTTATTTGTAATTTTGTATTTGTTCAATTTAGTCCTCCAAATTT
1 GTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAATTT
* *
28570 TATTTGCATATGAAATTGATCCATACTTATTACTTATTTCTATTTTTTAATTGGCCCATAACTTT
66 TATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAACTTT
28635 TTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
131 TTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
*
28700 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAGTTTTTATTTGTAATTTCATATTTGT
196 TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGT
28765 TCAATTTA
261 TCAATTTA
28773 ATTCTTAAAT
Statistics
Matches: 653, Mismatches: 31, Indels: 15
0.93 0.04 0.02
Matches are distributed among these distances:
423 85 0.13
424 369 0.57
426 3 0.00
427 4 0.01
429 1 0.00
430 191 0.29
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (427 bp):
GTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGTTCAATTTAGTCCTCCAAATTT
TATTTGCATCTGAAATTGATCCATACTTATTAATTATTTCTATTTTTTAATTGGCCCATAACTTT
TTAAATGAGTATAATTTAGTACTTTTTTGTATTAATTTCAACCTCACAATTTAAAATTATTTCGA
TTTGATCCCTCATCAATGTGTGTTGTTTAATTTATTTAAATTTTTATTTGTAATTTCATATTTGT
TCAATTTAGTCCTCCAAATTTTATTTGCATCTGAAATTGACTCACTATACTTATTTCTATTTTTT
AATTGGCACATAACTTTTTAAAAAGGTATAATTTAGAACTTTTTGTATTAATTTCAACCTCAAAA
TTTAAAATTATTTCGAATTGATCCCTCATCAATGTGA
Found at i:30875 original size:2 final size:2
Alignment explanation
Indices: 30868--30896 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
30858 TCCTGCACTT
30868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30897 CATGAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:35193 original size:14 final size:14
Alignment explanation
Indices: 35174--35209 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
35164 GTAAAAAGAT
*
35174 AATAAAAGTGATTA
1 AATAAAAGTAATTA
35188 AATAAAAGTAATTA
1 AATAAAAGTAATTA
35202 AAGTAAAA
1 AA-TAAAA
35210 ATAAGAAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (14 bp):
AATAAAAGTAATTA
Found at i:36923 original size:20 final size:19
Alignment explanation
Indices: 36900--36940 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
36890 TTTTTTTCCG
36900 TTCGAACAGCTTCTTTTCTT
1 TTCGAACAG-TTCTTTTCTT
* *
36920 TTCGAACTGTTTTTTTCTT
1 TTCGAACAGTTCTTTTCTT
36939 TT
1 TT
36941 TTTTCATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.12, C:0.20, G:0.10, T:0.59
Consensus pattern (19 bp):
TTCGAACAGTTCTTTTCTT
Found at i:36937 original size:19 final size:20
Alignment explanation
Indices: 36890--36940 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
36880 TTTTCGTCTT
**
36890 TTTTTTTCCGTTCGAACAGC
1 TTTTTTTCTTTTCGAACAGC
* *
36910 TTCTTTTCTTTTCGAACTG-
1 TTTTTTTCTTTTCGAACAGC
36929 TTTTTTTCTTTT
1 TTTTTTTCTTTT
36941 TTTTCATTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.10, C:0.20, G:0.10, T:0.61
Consensus pattern (20 bp):
TTTTTTTCTTTTCGAACAGC
Found at i:41450 original size:14 final size:14
Alignment explanation
Indices: 41431--41460 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
41421 GTAAAAAGAT
*
41431 AATAAAAGTGATTA
1 AATAAAAGTAATTA
41445 AATAAAAGTAATTA
1 AATAAAAGTAATTA
41459 AA
1 AA
41461 GCAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (14 bp):
AATAAAAGTAATTA
Found at i:43575 original size:50 final size:51
Alignment explanation
Indices: 43480--43575 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 51
43470 TTTTCTTTTA
* ** * *
43480 ACATTTTTTATATTTATTTATTTATTTTTCTTATTTTTTCTTTTTTATTAC
1 ACATATTTTATATTTATTTATTTATTTTAATTATTATTTCATTTTTATTAC
*
43531 ACATATTTT-TATTTATTTATTTATTTTAATT-TTCATTTGATTTTT
1 ACATATTTTATATTTATTTATTTATTTTAATTATT-ATTTCATTTTT
43576 TTATTTTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.05
50 28 0.74
51 8 0.21
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.71
Consensus pattern (51 bp):
ACATATTTTATATTTATTTATTTATTTTAATTATTATTTCATTTTTATTAC
Found at i:43577 original size:20 final size:20
Alignment explanation
Indices: 43545--43584 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
43535 ATTTTTATTT
43545 ATTTATTTATTTTAATTTTC
1 ATTTATTTATTTTAATTTTC
*
43565 ATTTGATTT-TTTTATTTTTC
1 ATTT-ATTTATTTTAATTTTC
43585 CATCTAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (20 bp):
ATTTATTTATTTTAATTTTC
Found at i:43579 original size:25 final size:24
Alignment explanation
Indices: 43535--43582 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
43525 TATTACACAT
*
43535 ATTTTTATTTATTTATTTATTTTA
1 ATTTTCATTTATTTATTTATTTTA
*
43559 ATTTTCATTTGATTTTTTTATTTT
1 ATTTTCATTT-ATTTATTTATTTT
43583 TCCATCTAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (24 bp):
ATTTTCATTTATTTATTTATTTTA
Found at i:43599 original size:60 final size:51
Alignment explanation
Indices: 43450--43600 Score: 126
Period size: 54 Copynumber: 2.7 Consensus size: 51
43440 AAAATTTAAT
* *
43450 ATTTTCTTCTTTTGTTCTGTTTTTCTTTTAACAT-TTTTTATATTTATTTATTTA
1 ATTTTCTTATTTT-TTC--TTTTT-TATTAACATATTTTTATATTTATTTATTTA
*
43504 TTTTTCTTATTTTTTCTTTTTTATTACACATATTTTTATTTATTTATTTATTTTA
1 ATTTTCTTATTTTTTCTTTTTTATTA-ACATATTTTTA--TATTTATTTA-TTTA
43559 ATTTTCATTTGATTTTTT-TATTTTTCCATCTAACATATTTTT
1 ATTTTC--TT-ATTTTTTCT-TTTTT--AT-TAACATATTTTT
43601 TTACTTTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 18
0.79 0.04 0.17
Matches are distributed among these distances:
50 4 0.05
51 9 0.11
52 6 0.07
53 3 0.04
54 21 0.26
55 9 0.11
57 3 0.04
58 12 0.15
60 12 0.15
61 2 0.02
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (51 bp):
ATTTTCTTATTTTTTCTTTTTTATTAACATATTTTTATATTTATTTATTTA
Found at i:46805 original size:13 final size:13
Alignment explanation
Indices: 46787--46811 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46777 ATAGTTGAAC
46787 AGTCTTCATATGT
1 AGTCTTCATATGT
46800 AGTCTTCATATG
1 AGTCTTCATATG
46812 CGCGTCTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (13 bp):
AGTCTTCATATGT
Found at i:47124 original size:3 final size:3
Alignment explanation
Indices: 47116--47167 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
47106 TCATTTCATT
* * * *
47116 TTA TTA TTA TTA GTA TTA TTA TTA ATA -TA ATA ATA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
47162 TTA TTA
1 TTA TTA
47168 CAAATAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 4 0.09
3 39 0.91
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:47173 original size:26 final size:29
Alignment explanation
Indices: 47120--47175 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
47110 TTCATTTTAT
*
47120 TATTATTAGTATTATTATTAATATAATAA
1 TATTATTAGTATTATTATTAACATAATAA
*
47149 TATTATTATTATT-TTATT-ACA-AATAA
1 TATTATTAGTATTATTATTAACATAATAA
47175 T
1 T
47176 TACAAAGCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 2 0.08
28 5 0.20
29 12 0.48
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (29 bp):
TATTATTAGTATTATTATTAACATAATAA
Found at i:48695 original size:13 final size:14
Alignment explanation
Indices: 48667--48700 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
48657 ATATATACTA
*
48667 TTATTATTATTTTT
1 TTATTAATATTTTT
48681 TTATTAATA-TTTT
1 TTATTAATATTTTT
48694 TTATTAA
1 TTATTAA
48701 GAAATGGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATTAATATTTTT
Found at i:48792 original size:120 final size:121
Alignment explanation
Indices: 48566--48801 Score: 291
Period size: 121 Copynumber: 2.0 Consensus size: 121
48556 AATATTTATT
* * *
48566 TATTTTTAATATTAAGAAATGACAGTCTTAAAGCAACTGGATGTCCATTTTCTGATATTTTTAAT
1 TATTTTT-ATATTAAGAAATGACAGTCTTAAAGCAACTAGAAGTCCATTTTCTGATATTTCTAAT
* * * * * *
48631 AAATAAATATTTTACTTTTATAAATTATATATACTATTATTATTATTTTTTTATTAA
65 AAATAAATATCTTACTTTTATAAAATAAAAATACTATTATTAATATATTTTTATTAA
* * *
48688 TATTTTT-TATTAAGAAATGGACTGTCTTAAAGCACCTAGAAGTCCTTTTTCTGATATTTCTAAG
1 TATTTTTATATTAAGAAAT-GACAGTCTTAAAGCAACTAGAAGTCCATTTTCTGATATTTCTAA-
*
48752 TAAATAAATATCTTA--TTTATAAAAATAAAAATATTA-TATTAATATATTTT
64 TAAATAAATATCTTACTTTTAT-AAAATAAAAATACTATTATTAATATATTTT
48802 CTTAAAATTA
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
120 28 0.29
121 49 0.50
122 21 0.21
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (121 bp):
TATTTTTATATTAAGAAATGACAGTCTTAAAGCAACTAGAAGTCCATTTTCTGATATTTCTAATA
AATAAATATCTTACTTTTATAAAATAAAAATACTATTATTAATATATTTTTATTAA
Found at i:50598 original size:3 final size:3
Alignment explanation
Indices: 50584--50624 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
50574 TAATATTAGT
*
50584 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
50625 TAGACTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:56900 original size:31 final size:31
Alignment explanation
Indices: 56851--56914 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
56841 TCAAAAAAAT
* *
56851 ATATGGTCAATTTTGTTTTTATTTAATTAAG
1 ATATGATCAATTTCGTTTTTATTTAATTAAG
*
56882 ATATGATCACTTTCGTTTTTATTTAATTAAG
1 ATATGATCAATTTCGTTTTTATTTAATTAAG
56913 AT
1 AT
56915 GTGGTCACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.53
Consensus pattern (31 bp):
ATATGATCAATTTCGTTTTTATTTAATTAAG
Found at i:57935 original size:31 final size:31
Alignment explanation
Indices: 57885--57960 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
57875 TTAACTCGGG
* *
57885 GTGACCACATATTAATTAAATAAAAACGAAA
1 GTGACCATATCTTAATTAAATAAAAACGAAA
*
57916 GTGACCATATCTTAGTTAAATAAAAACGAAA
1 GTGACCATATCTTAATTAAATAAAAACGAAA
*
57947 GTGACAATATCTTA
1 GTGACCATATCTTA
57961 TGTTTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.13, G:0.12, T:0.26
Consensus pattern (31 bp):
GTGACCATATCTTAATTAAATAAAAACGAAA
Found at i:58986 original size:47 final size:49
Alignment explanation
Indices: 58924--59054 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 49
58914 TTAAAGATGT
*
58924 AAATAAATACAAAATAATTAAACAGTGAAAATAAAAAAAAAAG-AAA-C
1 AAATAAATACAAAATAATTATACAGTGAAAATAAAAAAAAAAGAAAAGC
* * * * *
58971 AAATAAATACGAAATAATTATGCAGTGAAAATTTTTAAAAGAAAAGAAAAGT
1 AAATAAATACAAAATAATTATACAGTGAAAA---TAAAAAAAAAAGAAAAGC
*
59023 AAATAAATAAAAAATAATTATACAGTGAAAAT
1 AAATAAATACAAAATAATTATACAGTGAAAAT
59055 TTATTTATAG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
47 28 0.40
49 1 0.01
50 10 0.14
51 3 0.04
52 28 0.40
ACGTcount: A:0.65, C:0.05, G:0.09, T:0.21
Consensus pattern (49 bp):
AAATAAATACAAAATAATTATACAGTGAAAATAAAAAAAAAAGAAAAGC
Found at i:59038 original size:52 final size:51
Alignment explanation
Indices: 58922--59056 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 51
58912 ACTTAAAGAT
*
58922 GTAAATAAATACAAAATAATTAAACAGTGAAAA---TAAAAAAAAAAGAAA
1 GTAAATAAATACAAAATAATTATACAGTGAAAATTTTAAAAAAAAAAGAAA
* * * * *
58970 -CAAATAAATACGAAATAATTATGCAGTGAAAATTTTTAAAAGAAAAGAAAA
1 GTAAATAAATACAAAATAATTATACAGTGAAAATTTTAAAAAAAAAAG-AAA
*
59021 GTAAATAAATAAAAAATAATTATACAGTGAAAATTT
1 GTAAATAAATACAAAATAATTATACAGTGAAAATTT
59057 ATTTATAGGA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 28 0.39
50 10 0.14
51 3 0.04
52 31 0.43
ACGTcount: A:0.63, C:0.04, G:0.10, T:0.23
Consensus pattern (51 bp):
GTAAATAAATACAAAATAATTATACAGTGAAAATTTTAAAAAAAAAAGAAA
Found at i:60356 original size:21 final size:21
Alignment explanation
Indices: 60330--60370 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60320 ATTTGAATAT
*
60330 TATGAAAGGGTATCGATTCCC
1 TATGAAAGGGTACCGATTCCC
*
60351 TATGAAGGGGTACCGATTCC
1 TATGAAAGGGTACCGATTCC
60371 TCCCATTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (21 bp):
TATGAAAGGGTACCGATTCCC
Found at i:60693 original size:34 final size:32
Alignment explanation
Indices: 60654--60723 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
60644 TATTGTAAAG
* * *
60654 GGGAAATGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
60688 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
60720 GGGA
1 GGGA
60724 GTTGTAAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 11 0.34
33 1 0.03
34 20 0.62
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:61606 original size:19 final size:20
Alignment explanation
Indices: 61582--61630 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
61572 AAACCATTTT
*
61582 ATTTTGAAAACAAAAAT-AG
1 ATTTTGAAAACAAAAATGAA
* *
61601 ATTTTGAAAGCCAAAATGAA
1 ATTTTGAAAACAAAAATGAA
61621 ATTTTGAAAA
1 ATTTTGAAAA
61631 AGGATTTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
ATTTTGAAAACAAAAATGAA
Found at i:63109 original size:21 final size:20
Alignment explanation
Indices: 63083--63156 Score: 70
Period size: 21 Copynumber: 3.9 Consensus size: 20
63073 ATATTGTCCA
63083 GGGGTACAGATTTCCCCCCAG
1 GGGGTACAGA-TTCCCCCCAG
63104 GGGGTATC-GATT--CCCC--
1 GGGGTA-CAGATTCCCCCCAG
*
63120 -GGGAACAGATTTCCCCCCAG
1 GGGGTACAGA-TTCCCCCCAG
63140 GGGGTACAGATTCCCCC
1 GGGGTACAGATTCCCCC
63157 TGCATGGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 17
0.69 0.03 0.27
Matches are distributed among these distances:
14 1 0.02
15 6 0.14
16 2 0.05
18 8 0.19
20 9 0.21
21 16 0.37
22 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (20 bp):
GGGGTACAGATTCCCCCCAG
Found at i:63294 original size:21 final size:21
Alignment explanation
Indices: 63268--63308 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63258 ATTTGAATAT
*
63268 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
63289 TATGAAGGGGTACCGATTCC
1 TATGAAGGGGTACCGATTCC
63309 TCCCATTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:63631 original size:34 final size:32
Alignment explanation
Indices: 63592--63661 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
63582 TATTGTAAAG
* *
63592 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
63626 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
63658 GGGA
1 GGGA
63662 GTTGTAAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:64543 original size:19 final size:20
Alignment explanation
Indices: 64519--64567 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
64509 AAACGATTTT
*
64519 ATTTTGAAAACAAAAAT-AG
1 ATTTTGAAAACAAAAATGAA
* *
64538 ATTTTGAAAGCCAAAATGAA
1 ATTTTGAAAACAAAAATGAA
64558 ATTTTGAAAA
1 ATTTTGAAAA
64568 AGGATTTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
ATTTTGAAAACAAAAATGAA
Found at i:66047 original size:21 final size:20
Alignment explanation
Indices: 66021--66094 Score: 70
Period size: 21 Copynumber: 3.9 Consensus size: 20
66011 ATATTGTCCA
66021 GGGGTACAGATTTCCCCCCAG
1 GGGGTACAGA-TTCCCCCCAG
66042 GGGGTATC-GATT--CCCC--
1 GGGGTA-CAGATTCCCCCCAG
*
66058 -GGGAACAGATTTCCCCCCAG
1 GGGGTACAGA-TTCCCCCCAG
66078 GGGGTACAGATTCCCCC
1 GGGGTACAGATTCCCCC
66095 TGCATGGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 17
0.69 0.03 0.27
Matches are distributed among these distances:
14 1 0.02
15 6 0.14
16 2 0.05
18 8 0.19
20 9 0.21
21 16 0.37
22 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (20 bp):
GGGGTACAGATTCCCCCCAG
Found at i:66232 original size:21 final size:21
Alignment explanation
Indices: 66206--66246 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
66196 ATTTGAATAT
*
66206 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
66227 TATGAAGGGGTACCGATTCC
1 TATGAAGGGGTACCGATTCC
66247 TCCCACTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:66548 original size:31 final size:32
Alignment explanation
Indices: 66513--66581 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 32
66503 GTTTACATCT
*
66513 TTTATCCTATTGT-AAAG-GGGAAAGGTTCTAG
1 TTTATCC-AGTGTAAAAGAGGGAAAGGTTCTAG
*
66544 TTTATCCCGTGTAAAAGCTAGGGAAAGGTTCTAG
1 TTTATCCAGTGTAAAAG--AGGGAAAGGTTCTAG
66578 TTTA
1 TTTA
66582 GCCCGGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 3 0.09
31 11 0.34
34 18 0.56
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (32 bp):
TTTATCCAGTGTAAAAGAGGGAAAGGTTCTAG
Found at i:66570 original size:34 final size:32
Alignment explanation
Indices: 66530--66599 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
66520 TATTGTAAAG
* *
66530 GGGAAAGGTTCTAGTTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGTTTAGCCCG-G-AAAAACTA
66564 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
66596 GGGA
1 GGGA
66600 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
Found at i:67482 original size:19 final size:20
Alignment explanation
Indices: 67458--67506 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
67448 AAACGATTTT
*
67458 ATTTTGAAAACAAAAAT-AG
1 ATTTTGAAAACAAAAATGAA
* *
67477 ATTTTGAAAGCCAAAATGAA
1 ATTTTGAAAACAAAAATGAA
67497 ATTTTGAAAA
1 ATTTTGAAAA
67507 AAGGATTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
ATTTTGAAAACAAAAATGAA
Found at i:68980 original size:20 final size:19
Alignment explanation
Indices: 68955--69030 Score: 72
Period size: 20 Copynumber: 4.1 Consensus size: 19
68945 ATCATATTGT
68955 CCAGGGGTACAGATTTCCCC
1 CCAGGGGTACAGA-TTCCCC
68975 CCAGGGGGTATC-GATT--CC
1 CCA-GGGGTA-CAGATTCCCC
*
68993 CC--GGGAACAGATTTCCCC
1 CCAGGGGTACAGA-TTCCCC
69011 CCAGGGGTACAGATTCCCC
1 CCAGGGGTACAGATTCCCC
69030 C
1 C
69031 TGCATGGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
14 1 0.02
15 6 0.13
16 2 0.04
18 8 0.17
19 7 0.15
20 13 0.28
21 8 0.17
22 1 0.02
ACGTcount: A:0.20, C:0.36, G:0.26, T:0.18
Consensus pattern (19 bp):
CCAGGGGTACAGATTCCCC
Found at i:69168 original size:21 final size:21
Alignment explanation
Indices: 69142--69182 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
69132 ATTTGAATAT
*
69142 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
69163 TATGAAGGGGTACCGATTCC
1 TATGAAGGGGTACCGATTCC
69183 TCCCATTCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:69511 original size:34 final size:32
Alignment explanation
Indices: 69466--69535 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
69456 TATTGTAAAG
* * *
69466 GGGAAATGTTCTAGTTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGTTTAGCCCG-G-AAAAACTA
69500 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
69532 GGGA
1 GGGA
69536 GTTGTAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (32 bp):
GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
Found at i:70428 original size:19 final size:20
Alignment explanation
Indices: 70394--70439 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
70384 AAACGATTTT
*
70394 ATTTTGAAAACAAAAAT-AG
1 ATTTTGAAAACAAAAATGAA
* *
70413 ATTTTGAAAGCCAAAATGAA
1 ATTTTGAAAACAAAAATGAA
70433 ATTTTGA
1 ATTTTGA
70440 TAAAGGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (20 bp):
ATTTTGAAAACAAAAATGAA
Found at i:71918 original size:21 final size:20
Alignment explanation
Indices: 71893--71966 Score: 70
Period size: 21 Copynumber: 3.9 Consensus size: 20
71883 ATATTGTCCT
71893 GGGGTACAGATTTCCCCCCAG
1 GGGGTACAGA-TTCCCCCCAG
71914 GGGGTATC-GATT--CCCC--
1 GGGGTA-CAGATTCCCCCCAG
*
71930 -GGGAACAGATTCCCCCCCAG
1 GGGGTACAGATT-CCCCCCAG
71950 GGGGTACAGATTCCCCC
1 GGGGTACAGATTCCCCC
71967 TGCATGGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 17
0.69 0.03 0.27
Matches are distributed among these distances:
14 1 0.02
15 8 0.19
18 8 0.19
20 7 0.16
21 18 0.42
22 1 0.02
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (20 bp):
GGGGTACAGATTCCCCCCAG
Found at i:72117 original size:21 final size:21
Alignment explanation
Indices: 72078--72118 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72068 ATTTGAATAT
* *
72078 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGCTACCGATTCCC
*
72099 TATGAAGGGCTACCTATTCC
1 TATGAAGGGCTACCGATTCC
72119 TCCCATTCTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (21 bp):
TATGAAGGGCTACCGATTCCC
Found at i:72420 original size:31 final size:32
Alignment explanation
Indices: 72385--72453 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 32
72375 GTTTACATCT
*
72385 TTTATCCTATTGT-AAAG-GGGAAAGGTTCTAG
1 TTTATCC-AGTGTAAAAGAGGGAAAGGTTCTAG
*
72416 TTTATCCCGTGTAAAAGCTAGGGAAAGGTTCTAG
1 TTTATCCAGTGTAAAAG--AGGGAAAGGTTCTAG
72450 TTTA
1 TTTA
72454 GCCCGGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 3 0.09
31 11 0.34
34 18 0.56
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (32 bp):
TTTATCCAGTGTAAAAGAGGGAAAGGTTCTAG
Found at i:72442 original size:34 final size:32
Alignment explanation
Indices: 72402--72471 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
72392 TATTGTAAAG
* *
72402 GGGAAAGGTTCTAGTTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGTTTAGCCCG-G-AAAAACTA
72436 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
72468 GGGA
1 GGGA
72472 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
Found at i:73364 original size:19 final size:20
Alignment explanation
Indices: 73330--73375 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
73320 AAACGATTTT
*
73330 ATTTTGAAAACAAAAAT-AG
1 ATTTTGAAAACAAAAATGAA
* *
73349 ATTTTGAAAGCCAAAATGAA
1 ATTTTGAAAACAAAAATGAA
73369 ATTTTGA
1 ATTTTGA
73376 TAAAGGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (20 bp):
ATTTTGAAAACAAAAATGAA
Found at i:74854 original size:21 final size:20
Alignment explanation
Indices: 74824--74896 Score: 59
Period size: 21 Copynumber: 3.8 Consensus size: 20
74814 AATCATATTG
74824 TCCAGGGGTACAGATTTCCC
1 TCCAGGGGTACAGATTTCCC
74844 TCCAGGGGGTATC-GA-TT-CC
1 TCCA-GGGGTA-CAGATTTCCC
*
74863 -CC--GGGAACAGATTTCCC
1 TCCAGGGGTACAGATTTCCC
*
74880 CCCAGGGGGTACAGATT
1 TCCA-GGGGTACAGATT
74897 CCCCCTGCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 17
0.69 0.03 0.28
Matches are distributed among these distances:
14 1 0.02
15 6 0.14
16 2 0.05
17 2 0.05
18 4 0.10
19 2 0.05
20 6 0.14
21 18 0.43
22 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (20 bp):
TCCAGGGGTACAGATTTCCC
Found at i:75052 original size:21 final size:21
Alignment explanation
Indices: 75013--75053 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75003 ATTTGAATAT
*
75013 TATGAAGGGGTATCAATTCCC
1 TATGAAGGGGTACCAATTCCC
*
75034 TATGAAGGGGTACCGATTCC
1 TATGAAGGGGTACCAATTCC
75054 TCCCATTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (21 bp):
TATGAAGGGGTACCAATTCCC
Found at i:75376 original size:34 final size:32
Alignment explanation
Indices: 75337--75406 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 32
75327 TATTGTAAAG
*
75337 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTATCCCG-G-AAAAACTA
*
75371 GGGAAAGGTTCTAGTTTATCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTATCCCGGAAAAACTA
75403 GGGA
1 GGGA
75407 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 11 0.32
33 1 0.03
34 22 0.65
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTATCCCGGAAAAACTA
Found at i:79286 original size:9 final size:9
Alignment explanation
Indices: 79272--79299 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
79262 CAGAGTCCAG
79272 CCCGTTCAT
1 CCCGTTCAT
79281 CCCGTTCAT
1 CCCGTTCAT
79290 CCCGTTCAT
1 CCCGTTCAT
79299 C
1 C
79300 ATAGCAATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.46, G:0.11, T:0.32
Consensus pattern (9 bp):
CCCGTTCAT
Found at i:86289 original size:211 final size:211
Alignment explanation
Indices: 85896--86507 Score: 746
Period size: 211 Copynumber: 2.9 Consensus size: 211
85886 CACTATTTAG
*
85896 TAAGTAAATTAAGGTCAATTCATTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGA
1 TAAGTAAATTAAGGT--ATTCCTTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGA
* * *
85961 ACTCCATGAGAGGCAGAGCACAATCATTAACTTCTGATTTAATATCTGGAGAAGATACAATGAGG
64 ACTCCATGAGAAGCAGAGCACAAGCATTAACTTCTGATTTAATATCTGGAGAAGATACAAAGAGG
* ** *
86026 GAGATGGTTATCTGACATTTTGATTGCAATCCTCTATCAGACACCCCATTTCCCACTTC-TCTAA
129 GAGATGGCTATCTGACATTTTGATCACAATCCTCTATCAGACACCACATTTCCCACTTCTTC-AA
* **
86090 TCCACATTCTTATTTCTCT
193 TCCACATTCTAATCACTCT
* *
86109 TCTA-TAAATTAAGGTATTCCTTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGCA
1 T-AAGTAAATTAAGGTATTCCTTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGAA
* * *
86173 CTCCATGAGAAGCAGTGCACGAGCATTAACTTCTGATTTAATATATGGAGAAGATACAAAGAGGG
65 CTCCATGAGAAGCAGAGCACAAGCATTAACTTCTGATTTAATATCTGGAGAAGATACAAAGAGGG
* * * * * * * *
86238 CGATGGCTATATGATATTTTGACCACAATTCTTTATCCGACGCCACATTTCCCACTTCTTCAATC
130 AGATGGCTATCTGACATTTTGATCACAATCCTCTATCAGACACCACATTTCCCACTTCTTCAATC
*
86303 CACGTTCTAATCACTCT
195 CACATTCTAATCACTCT
* ** * * * *
86320 TAAGTAATTTAAAGCAAATGCCTTTTCCATA-TTGAGGATTATGTAAAATAAGAGCCAAATTTGA
1 TAAGTAAATT-AAG-GTATTCCTTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGA
** * * *
86384 ACTCCATGAGAAATAGAGCACAAGCATTAACTTCTGATTTACTATCCGAAGAAGATA-AAAGAGG
64 ACTCCATGAGAAGCAGAGCACAAGCATTAACTTCTGATTTAATATCTGGAGAAGATACAAAGAGG
* ** * * **
86448 GAGATGGGTATCTGACATTTTGATCACAATCCTGGATTAAATGCCACATTTCCCACTTCT
129 GAGATGGCTATCTGACATTTTGATCACAATCCTCTATCAGACACCACATTTCCCACTTCT
86508 CCAAACCATC
Statistics
Matches: 340, Mismatches: 54, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
210 1 0.00
211 230 0.68
212 83 0.24
213 25 0.07
214 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (211 bp):
TAAGTAAATTAAGGTATTCCTTTTCCATATTTGAGAATTATGTAAAAGAAGAGCCAAACTTGAAC
TCCATGAGAAGCAGAGCACAAGCATTAACTTCTGATTTAATATCTGGAGAAGATACAAAGAGGGA
GATGGCTATCTGACATTTTGATCACAATCCTCTATCAGACACCACATTTCCCACTTCTTCAATCC
ACATTCTAATCACTCT
Found at i:91029 original size:21 final size:20
Alignment explanation
Indices: 90996--91039 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
90986 ATAATTCTTG
* *
90996 ATTTGGTCACTAAAATTTTA
1 ATTTGATCACTAAAATTTGA
*
91016 ATTTGATCATCTAACATTTGA
1 ATTTGATCA-CTAAAATTTGA
91037 ATT
1 ATT
91040 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (20 bp):
ATTTGATCACTAAAATTTGA
Found at i:94978 original size:18 final size:18
Alignment explanation
Indices: 94953--95025 Score: 92
Period size: 18 Copynumber: 3.9 Consensus size: 18
94943 ACTGAATATT
94953 TGTCCCGAATGACCACTA
1 TGTCCCGAATGACCACTA
* *
94971 TATCCCGAAGGACCACTGA
1 TGTCCCGAATGACCACT-A
* *
94990 TTGTTCCGAATAACCACTA
1 -TGTCCCGAATGACCACTA
95009 TGTCCCGAATGACCACT
1 TGTCCCGAATGACCACT
95026 GATAATCCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 30 0.67
19 2 0.04
20 13 0.29
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (18 bp):
TGTCCCGAATGACCACTA
Found at i:95000 original size:38 final size:38
Alignment explanation
Indices: 94952--95028 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
94942 CACTGAATAT
*
94952 TTGTCCCGAATGACCACTATATCCCGAAGGACCACTGA
1 TTGTCCCGAATAACCACTATATCCCGAAGGACCACTGA
* * *
94990 TTGTTCCGAATAACCACTATGTCCCGAATGACCACTGA
1 TTGTCCCGAATAACCACTATATCCCGAAGGACCACTGA
95028 T
1 T
95029 AATCCCTCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (38 bp):
TTGTCCCGAATAACCACTATATCCCGAAGGACCACTGA
Found at i:95671 original size:64 final size:64
Alignment explanation
Indices: 95600--95763 Score: 184
Period size: 64 Copynumber: 2.6 Consensus size: 64
95590 ATTCCTTAAC
* * *
95600 GGGTGCATCGATGCACTACCTGTGCATCGGTACACAAATCTCATTCGATGTTTATATTTTAAGG
1 GGGTGCATCGATGCACTACCTGTGCATCGATACACAAATCACATTCGATGTTTATATTTTAAAG
* * * * * *
95664 GGGTGCATAGATGCACTACTTGTGCATCGATACACTAATGACATTCTATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTACCTGTGCATCGATACACAAATCACATTCGATGTTTATATTTTAAAG
** * * * * *
95728 AAGTGCATCGATACACTTCATGTGAATCGATGCACA
1 GGGTGCATCGATGCACTACCTGTGCATCGATACACA
95764 TTGAACAATT
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 82 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (64 bp):
GGGTGCATCGATGCACTACCTGTGCATCGATACACAAATCACATTCGATGTTTATATTTTAAAG
Found at i:100240 original size:22 final size:22
Alignment explanation
Indices: 100215--100256 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
100205 ATATGTCCCA
100215 AAGGACCACTGGATACGTCCTG
1 AAGGACCACTGGATACGTCCTG
100237 AAGGACCACTGGATACGTCC
1 AAGGACCACTGGATACGTCC
100257 CAAATGACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.17
Consensus pattern (22 bp):
AAGGACCACTGGATACGTCCTG
Found at i:107153 original size:22 final size:22
Alignment explanation
Indices: 107125--107177 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
107115 CCACTATGTT
* * *
107125 CCGAAGGACCATTGGATACGTC
1 CCGAAGGACCACTAGATACATC
107147 CCGAAGGACCACTAGATACATC
1 CCGAAGGACCACTAGATACATC
107169 CCGAAGGAC
1 CCGAAGGAC
107178 TAATATACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.32, C:0.30, G:0.25, T:0.13
Consensus pattern (22 bp):
CCGAAGGACCACTAGATACATC
Found at i:108745 original size:63 final size:63
Alignment explanation
Indices: 108641--108795 Score: 179
Period size: 63 Copynumber: 2.5 Consensus size: 63
108631 TTAGTGCTAG
* * ** *
108641 GTGTATCGATGCACATGAAGTGCATCGATGCATTAATTTAAA-AGAAAACATCGAATG-CTATCC
1 GTGTATCGATGCACAGGTAGTGCATCGATGCACCAACTTAAATA-AAAACATCGAATGAC-ATCC
** * **
108704 GTGTATCGATGCACAGGTAGTGCATCGATGCACCCCCTTAAATACAAACATCGAATGACATTT
1 GTGTATCGATGCACAGGTAGTGCATCGATGCACCAACTTAAATAAAAACATCGAATGACATCC
*
108767 GTGTACCGATGCACAGGTAGTGCATCGAT
1 GTGTATCGATGCACAGGTAGTGCATCGAT
108796 ACATACATTA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
63 77 0.97
64 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (63 bp):
GTGTATCGATGCACAGGTAGTGCATCGATGCACCAACTTAAATAAAAACATCGAATGACATCC
Found at i:109184 original size:31 final size:30
Alignment explanation
Indices: 109148--109218 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 30
109138 ATTATATGAA
109148 TTATGTGATAAAGGTATGGAAAATGAAATGT
1 TTATGTGATAAAGGTATGG-AAATGAAATGT
*
109179 TTATGTGATAAAGGTATGGAAATGATATGT
1 TTATGTGATAAAGGTATGGAAATGAAATGT
* *
109209 CTATGCGATA
1 TTATGTGATA
109219 TAAATTATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 18 0.49
31 19 0.51
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (30 bp):
TTATGTGATAAAGGTATGGAAATGAAATGT
Found at i:109434 original size:24 final size:25
Alignment explanation
Indices: 109407--109457 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 25
109397 GTTTATATGT
109407 GGTCATTCGGGACAAA-TTCTACGC
1 GGTCATTCGGGACAAATTTCTACGC
* *
109431 GGTCCTTTGGGACAAATTTCTACGC
1 GGTCATTCGGGACAAATTTCTACGC
109456 GG
1 GG
109458 GACTTTAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (25 bp):
GGTCATTCGGGACAAATTTCTACGC
Found at i:109463 original size:25 final size:24
Alignment explanation
Indices: 109415--109463 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
109405 GTGGTCATTC
**
109415 GGGACAAATTCTACGCGGTCCTTT
1 GGGACAAATTCTACGCGGGACTTT
109439 GGGACAAATTTCTACGCGGGACTTT
1 GGGACAAA-TTCTACGCGGGACTTT
109464 AGTGCAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (24 bp):
GGGACAAATTCTACGCGGGACTTT
Found at i:113181 original size:3 final size:3
Alignment explanation
Indices: 113098--113168 Score: 69
Period size: 3 Copynumber: 24.7 Consensus size: 3
113088 TTCATTTGAA
* *
113098 TAT TAT T-T ATAT T-T TAT TAT TAT TAT TAT TAT AAT TAT TAT AAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
113142 AAT TAT T-T TAT T-T TTT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
113169 ATAAATATTA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
2 7 0.12
3 50 0.86
4 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:114554 original size:40 final size:40
Alignment explanation
Indices: 114504--114584 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 40
114494 ATATCATTAT
* *
114504 TATTTTTATGTACAT-ATATATTG-ATTTTAGTTATTATTTA
1 TATTTATATGTACATAATAT-TTGAATATTA-TTATTATTTA
* *
114544 TATTTATATGTTCTTAATATTTGAATATTATTATTATTTA
1 TATTTATATGTACATAATATTTGAATATTATTATTATTTA
114584 T
1 T
114585 TCATATAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
40 26 0.74
41 9 0.26
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (40 bp):
TATTTATATGTACATAATATTTGAATATTATTATTATTTA
Found at i:114760 original size:18 final size:19
Alignment explanation
Indices: 114739--114774 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
114729 TTTAAATAAG
*
114739 ATAT-TATTTTTATAAATT
1 ATATCTATTTTAATAAATT
114757 ATATCTATTTTAATAAAT
1 ATATCTATTTTAATAAAT
114775 GCTTTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
ATATCTATTTTAATAAATT
Found at i:117125 original size:14 final size:15
Alignment explanation
Indices: 117096--117125 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
117086 GGGAATTCTT
117096 TTACAAATGTGGTGA
1 TTACAAATGTGGTGA
117111 TTACAAATG-GGTGA
1 TTACAAATGTGGTGA
117125 T
1 T
117126 GCTGCTCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (15 bp):
TTACAAATGTGGTGA
Found at i:126040 original size:16 final size:16
Alignment explanation
Indices: 126019--126058 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
126009 ATTATGCTTG
126019 AAGAAAAAATGAAGAA
1 AAGAAAAAATGAAGAA
126035 AAGAAAAAATGAAGAA
1 AAGAAAAAATGAAGAA
126051 AA-AAAAAA
1 AAGAAAAAA
126059 GAAAGAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (16 bp):
AAGAAAAAATGAAGAA
Found at i:126088 original size:31 final size:27
Alignment explanation
Indices: 126017--126096 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
126007 ATATTATGCT
**
126017 TGAAGAAAAAATGAAGAAAAGAAAAAA
1 TGAAGAAAAAAAAAAGAAAAGAAAAAA
126044 TGAAGAAAAAAAAAAGAAAGAGAAAAAA
1 TGAAGAAAAAAAAAAGAAA-AGAAAAAA
** *
126072 TGTTGAAAAAAGAAAA-AATAGAAAA
1 TGAAGAAAAAA-AAAAGAAAAGAAAA
126097 GGAGGGTCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.50
28 19 0.41
29 4 0.09
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (27 bp):
TGAAGAAAAAAAAAAGAAAAGAAAAAA
Found at i:126095 original size:16 final size:15
Alignment explanation
Indices: 126019--126096 Score: 72
Period size: 16 Copynumber: 5.0 Consensus size: 15
126009 ATTATGCTTG
126019 AAGAAAAAATGAAGAA
1 AAGAAAAAATGAA-AA
126035 AAGAAAAAATGAAGAA
1 AAGAAAAAATGAA-AA
126051 AA-AAAAAA-G-AAA
1 AAGAAAAAATGAAAA
*
126063 GAGAAAAAATGTTGAAAA
1 AAGAAAAAA---TGAAAA
126081 AAGAAAAAATAGAAAA
1 AAGAAAAAAT-GAAAA
126097 GGAGGGTCAG
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
12 3 0.06
13 7 0.13
14 1 0.02
15 7 0.13
16 23 0.43
17 1 0.02
18 11 0.21
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.08
Consensus pattern (15 bp):
AAGAAAAAATGAAAA
Found at i:126466 original size:18 final size:18
Alignment explanation
Indices: 126443--126477 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
126433 CAAGTTTATC
126443 TTTTTGAAATTCAATTTA
1 TTTTTGAAATTCAATTTA
126461 TTTTTGAAATTCAATTT
1 TTTTTGAAATTCAATTT
126478 GTTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTTTGAAATTCAATTTA
Found at i:127837 original size:113 final size:112
Alignment explanation
Indices: 127637--128323 Score: 649
Period size: 123 Copynumber: 5.8 Consensus size: 112
127627 GATTCGAATC
*
127637 CATCA-TTCGATGGATCAACATTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
1 CATCACTT-GATGGATCAACATTTCCAG-AGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* * * * *
127701 AAAAAGAAGTTCATAATGTGAAGAACTTGTTTAACCTTTTGCTCA-AATT
64 AAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTG-TCATAACT
* *
127750 CATCACTTGATGGATCAGCATTTCCAGAGAGAGTTCGTAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCACTTGATGGATCAACATTTCCAGAGA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* ** * *
127815 AGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGT-TTGAATT
65 AGAAGAAGTTCATAATGAGAAGAGCTTGTTC-AACCTTTTGTCAT-AACT
* * *
127864 CATCA-TTCGATGGATCAACTTTTCCATAGAAGTTCATAATGAGAATAACTCATCTGAAG-A--A
1 CATCACTT-GATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
127925 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTT-TCATGACT
65 AGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTCATAACT
* *
127972 CTATCACAGAATGAGATAGATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCAT
1 C-ATCAC----T-TGATGGATC-A-A-C-A--TTTCCAGAGAAGTTCATAATGAGAAGAACTCAT
*
128037 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGT-ATTACT
54 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTCATAACT
* *
128095 CTATCACAGAATGAGATAGATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCAT
1 C-ATCAC----T-TGATGGATC-A-A-C-A--TTTCCAGAGAAGTTCATAATGAGAAGAACTCAT
*
128160 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTG-CATGACT
54 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTCATAACT
* *
128218 CTATCAC-AGAAGGAGATATATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCA
1 C-ATCACTTG-ATG-G----ATC-A-A-C-A--TTTCCAGAGAAGTTCATAATGAGAAGAACTCA
* * *
128282 TTTGAAGAAGGAAGAAGAAGTTCAAAATGAGAAGAACTTGTT
53 TCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTT
128324 TAATTTTTTT
Statistics
Matches: 511, Mismatches: 32, Indels: 52
0.86 0.05 0.09
Matches are distributed among these distances:
108 4 0.01
109 13 0.03
110 29 0.06
112 3 0.01
113 112 0.22
114 47 0.09
115 1 0.00
116 1 0.00
117 3 0.01
118 1 0.00
119 1 0.00
120 37 0.07
121 1 0.00
123 257 0.50
124 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (112 bp):
CATCACTTGATGGATCAACATTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGTCATAACT
Found at i:128104 original size:123 final size:123
Alignment explanation
Indices: 127877--128323 Score: 776
Period size: 123 Copynumber: 3.7 Consensus size: 123
127867 CATTCGATGG
* *
127877 ATCAACTTTTCCATAGAAGTTCATAATGAGAATAACTCATCTGAAG-A--AAGAAGAAGTTCATA
1 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
127939 ATGAGAAGAGCTTGTTCAACCTTTT-TCATGACTCTATCACAGAATGAGATAGATCAAC
66 ATGAGAAGAGCTTGTTCAACCTTTTGT-ATGACTCTATCACAGAATGAGATAGATCAAC
127997 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
1 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
*
128062 ATGAGAAGAGCTTGTTCAACCTTTTGTATTACTCTATCACAGAATGAGATAGATCAAC
66 ATGAGAAGAGCTTGTTCAACCTTTTGTATGACTCTATCACAGAATGAGATAGATCAAC
128120 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
1 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
* * *
128185 ATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCTATCACAGAAGGAGATATATCAAC
66 ATGAGAAGAGCTTGTTCAACCTTTTGTATGACTCTATCACAGAATGAGATAGATCAAC
* *
128243 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATTTGAAGAAGGAAGAAGAAGTTCAAA
1 ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
*
128308 ATGAGAAGAACTTGTT
66 ATGAGAAGAGCTTGTT
128324 TAATTTTTTT
Statistics
Matches: 313, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
120 44 0.14
121 1 0.00
123 267 0.85
124 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (123 bp):
ATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATA
ATGAGAAGAGCTTGTTCAACCTTTTGTATGACTCTATCACAGAATGAGATAGATCAAC
Found at i:128243 original size:246 final size:235
Alignment explanation
Indices: 127632--128323 Score: 819
Period size: 246 Copynumber: 2.9 Consensus size: 235
127622 GCAAAGATTC
* * ** * *
127632 GAATCCATCATTCGATGGATCAACATTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 GAATTCATCATTAGATACATCAACTTTTCCAG-AGAAGTTCATAATGAGAAGAACTCATCTGAAG
* * * * * * *
127697 AAGGAAAAAGAAGTTCATAATGTGAAGAACTTGTTTAACCTTTTGC-TCAAAT-TCATCACTTG-
65 AAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCAT-GACTCT-ATCAC-AGA
* *
127759 ATG-G---AT---CAGC-A--TTTCCAGAGAGAGTTCGTAATGAGAAGAACTCATCTGAAGAAGG
127 ATGAGATAATCAACATCAACTTTTCCAGAGA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGG
* *
127814 AAGAAGAAATTCATAATGAGAAGAATTTGTTCAAACCTTTTGTTT
191 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACCTTTTGTTT
* ** * *
127859 GAATTCATCATTCGATGGATCAACTTTTCCATAGAAGTTCATAATGAGAATAACTCATCTGAAG-
1 GAATTCATCATTAGATACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
127923 A--AAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTTCATGACTCTATCACAGAATGA
66 AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCTATCACAGAATGA
127986 GATAGATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
131 GATA-ATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
*
128051 AGAAGTTCATAATGAGAAGAGCTTGTTC-AACCTTTTGTATT
195 AGAAGTTCATAATGAGAAGAACTTGTTCAAACCTTTTGT-TT
*
128092 --ACTCTATCACAGAATGAGATAGATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAA
1 GAATTC-AT--C---AT----TAGAT--ACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAA
128155 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCT
54 CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCT
* *
128220 ATCACAGAAGGAGATATATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATTT
119 ATCACAGAATGAGATA-ATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCT
*
128285 GAAGAAGGAAGAAGAAGTTCAAAATGAGAAGAACTTGTT
183 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
128324 TAATTTTTTT
Statistics
Matches: 405, Mismatches: 30, Indels: 41
0.85 0.06 0.09
Matches are distributed among these distances:
222 1 0.00
223 47 0.12
224 3 0.01
225 1 0.00
226 30 0.07
227 29 0.07
228 2 0.00
231 6 0.01
232 13 0.03
233 63 0.16
234 11 0.03
237 2 0.00
241 4 0.01
243 44 0.11
244 1 0.00
246 148 0.37
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (235 bp):
GAATTCATCATTAGATACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTTGCATGACTCTATCACAGAATGA
GATAATCAACATCAACTTTTCCAGAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA
GAAGTTCATAATGAGAAGAACTTGTTCAAACCTTTTGTTT
Found at i:128657 original size:9 final size:9
Alignment explanation
Indices: 128650--128708 Score: 58
Period size: 9 Copynumber: 7.2 Consensus size: 9
128640 ATATTTTATA
*
128650 ATTATTATT
1 ATTATAATT
128659 ATTATAATT
1 ATTATAATT
128668 ATTAT-A--
1 ATTATAATT
128674 ATTATAATT
1 ATTATAATT
128683 ATTATAA-T
1 ATTATAATT
128691 -TT-TAATT
1 ATTATAATT
*
128698 ATTATTATT
1 ATTATAATT
128707 AT
1 AT
128709 ATATTTTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 8 0.19
7 4 0.10
8 4 0.10
9 26 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
ATTATAATT
Found at i:128665 original size:15 final size:15
Alignment explanation
Indices: 128641--128709 Score: 104
Period size: 15 Copynumber: 4.7 Consensus size: 15
128631 ATATTATTTA
128641 TATT-TTATAATTAT
1 TATTATTATAATTAT
128655 TATTATTATAATTAT
1 TATTATTATAATTAT
*
128670 TATAATTATAATTAT
1 TATTATTATAATTAT
* *
128685 TATAATTTTAATTAT
1 TATTATTATAATTAT
128700 TATTATTATA
1 TATTATTATA
128710 TATTTTAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 4 0.08
15 46 0.92
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATTATAATTAT
Done.