Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01002414.1 Hibiscus syriacus cultivar Beakdansim tig00004936_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 131910
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:128706 original size:6 final size:6

Alignment explanation


    Indices: 128632--128713  Score: 71
    Period size: 6  Copynumber: 13.7  Consensus size: 6

     128622 TTCATTTGAA

                                  *                *          *     
     128632 TATTAT T-TATAT T-TTAT AATTAT TATTAT TATAAT TATTAT AATTAT
          1 TATTAT TAT-TAT TATTAT TATTAT TATTAT TATTAT TATTAT TATTAT

            *         *                              
     128679 AATTAT TATAAT T-TTAAT TATTAT TATTAT ATATT
          1 TATTAT TATTAT TATT-AT TATTAT TATTAT -TATT

     128714 TTAATAAATA


Statistics
Matches: 63,  Mismatches: 8, Indels: 9
        0.79            0.10        0.11

Matches are distributed among these distances:
   5    5  0.08
   6   52  0.83
   7    6  0.10

ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61


Consensus pattern (6 bp):   
TATTAT

Done.