Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002417.1 Hibiscus syriacus cultivar Beakdansim tig00004939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96692
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:326 original size:8 final size:7
Alignment explanation
Indices: 288--335 Score: 73
Period size: 7 Copynumber: 7.0 Consensus size: 7
278 TTTTCATACA
288 TGCA-TT
1 TGCATTT
294 TGCATTT
1 TGCATTT
301 TGCATTT
1 TGCATTT
308 TGCATTT
1 TGCATTT
315 TGCATCTT
1 TGCAT-TT
323 TGCATTT
1 TGCATTT
330 T-CATTT
1 TGCATTT
336 ATATTTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 9 0.22
7 24 0.60
8 7 0.17
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.56
Consensus pattern (7 bp):
TGCATTT
Found at i:3174 original size:22 final size:22
Alignment explanation
Indices: 3148--3238 Score: 98
Period size: 22 Copynumber: 4.2 Consensus size: 22
3138 AAAGAAGAGG
3148 AAAAGGAAAAAGGAAAAAAGAA
1 AAAAGGAAAAAGGAAAAAAGAA
* * *
3170 AAAAGAAAAAAGAAAAAAAGGA
1 AAAAGGAAAAAGGAAAAAAGAA
*
3192 AAAA-GAAAAAAGAAAAAAGAAA
1 AAAAGGAAAAAGGAAAAAAG-AA
*
3214 AAAAGG--GAAGGAAAAAAAGAA
1 AAAAGGAAAAAGG-AAAAAAGAA
3235 AAAA
1 AAAA
3239 TTAAATCAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
21 21 0.37
22 35 0.61
23 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AAAAGGAAAAAGGAAAAAAGAA
Found at i:3180 original size:29 final size:29
Alignment explanation
Indices: 3154--3238 Score: 127
Period size: 29 Copynumber: 2.9 Consensus size: 29
3144 GAGGAAAAGG
3154 AAAAAGGAAAAAAGAAAAAAGAAAAAAGAA
1 AAAAAGG-AAAAAGAAAAAAGAAAAAAGAA
3184 AAAAAGGAAAAAGAAAAAAGAAAAAAGAA
1 AAAAAGGAAAAAGAAAAAAGAAAAAAGAA
* *
3213 AAAAAGG-GAAGGAAAAAAAGAAAAAA
1 AAAAAGGAAAAAG-AAAAAAGAAAAAA
3239 TTAAATCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
28 3 0.06
29 42 0.81
30 7 0.13
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (29 bp):
AAAAAGGAAAAAGAAAAAAGAAAAAAGAA
Found at i:3238 original size:7 final size:7
Alignment explanation
Indices: 3148--3216 Score: 102
Period size: 7 Copynumber: 9.7 Consensus size: 7
3138 AAAGAAGAGG
*
3148 AAAAGGA
1 AAAAAGA
*
3155 AAAAGGA
1 AAAAAGA
3162 AAAAAGA
1 AAAAAGA
3169 AAAAAGA
1 AAAAAGA
3176 AAAAAGAA
1 AAAAAG-A
*
3184 AAAAAGG
1 AAAAAGA
3191 AAAAAGA
1 AAAAAGA
3198 AAAAAGA
1 AAAAAGA
3205 AAAAAGA
1 AAAAAGA
3212 AAAAA
1 AAAAA
3217 AGGGAAGGAA
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
7 51 0.88
8 7 0.12
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:3724 original size:32 final size:33
Alignment explanation
Indices: 3682--3749 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 33
3672 GAAAGTCTGG
* *
3682 AATTAAGAAGTATCTCTACGAGATGAGCATAAC
1 AATTAAGAAGTATCTCTACCAGATAAGCATAAC
3715 AATT-AGAAGTATCTCTACCAGATAAGCATAAC
1 AATTAAGAAGTATCTCTACCAGATAAGCATAAC
3747 AAT
1 AAT
3750 CACTTCTTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 29 0.88
33 4 0.12
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATTAAGAAGTATCTCTACCAGATAAGCATAAC
Found at i:8166 original size:24 final size:24
Alignment explanation
Indices: 8139--8232 Score: 88
Period size: 23 Copynumber: 4.0 Consensus size: 24
8129 CACCACAGCT
*
8139 CGTATAAATTGCACCGAAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
* * *
8163 CGTAGAAATTATC-CCGAAG-GAACG
1 CGTAGAAATT-GCACCGAAGTG-CCA
8187 CGTAGAAA-TGCACCGAAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
* *
8210 CATAG-AATTGCACCGTAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
8233 TATAAGATTG
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
22 3 0.05
23 27 0.48
24 25 0.45
25 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.18
Consensus pattern (24 bp):
CGTAGAAATTGCACCGAAGTGCCA
Found at i:9237 original size:21 final size:21
Alignment explanation
Indices: 9211--9251 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9201 TTTTTTCTTT
*
9211 AGGGGGGAATC-GATACCCCCC
1 AGGGGGAAATCTG-TACCCCCC
9232 AGGGGGAAATCTGTACCCCC
1 AGGGGGAAATCTGTACCCCC
9252 TGCACAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.12
Consensus pattern (21 bp):
AGGGGGAAATCTGTACCCCCC
Found at i:14590 original size:24 final size:24
Alignment explanation
Indices: 14563--14656 Score: 88
Period size: 23 Copynumber: 4.0 Consensus size: 24
14553 CACCACAGCT
*
14563 CGTATAAATTGCACCGAAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
* *
14587 CGTAGAAATTATC-CCGAAG-GACCG
1 CGTAGAAATT-GCACCGAAGTG-CCA
14611 CGTAGAAA-TGCACCGAAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
* * *
14634 CATAG-AATTGCAACGTAGTGCCA
1 CGTAGAAATTGCACCGAAGTGCCA
14657 TATAAGATTG
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
22 3 0.05
23 27 0.47
24 26 0.46
25 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.18
Consensus pattern (24 bp):
CGTAGAAATTGCACCGAAGTGCCA
Found at i:21937 original size:24 final size:23
Alignment explanation
Indices: 21910--21972 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 23
21900 AAATTTTGGC
21910 TTTTTTGGCTTTTTTTTGTTTTT
1 TTTTTTGGCTTTTTTTTGTTTTT
*
21933 TTTTTTGCCTTTTTTTTTGTTTTT
1 TTTTTTGGC-TTTTTTTTGTTTTT
*
21957 TTGTTTTTG-TTTTTTT
1 TT-TTTTGGCTTTTTTT
21973 GAAGAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 15 0.43
24 16 0.46
25 4 0.11
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (23 bp):
TTTTTTGGCTTTTTTTTGTTTTT
Found at i:21938 original size:14 final size:14
Alignment explanation
Indices: 21919--21973 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
21909 CTTTTTTGGC
21919 TTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
*
21933 TTTTTTGCCTTTTTTTT
1 TTTTTT---TTGTTTTT
21950 TGTTTTTTTGTTTTT
1 T-TTTTTTTGTTTTT
*
21965 GTTTTTTTG
1 TTTTTTTTG
21974 AAGAAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
14 14 0.41
15 7 0.21
17 8 0.24
18 5 0.15
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (14 bp):
TTTTTTTTGTTTTT
Found at i:21945 original size:32 final size:33
Alignment explanation
Indices: 21903--21971 Score: 88
Period size: 32 Copynumber: 2.1 Consensus size: 33
21893 TTTTTTGAAA
*
21903 TTTTGGCTTTTTTGGCT-TTTTTTTGTTTTT-TT
1 TTTTGCCTTTTTT-GCTGTTTTTTTGTTTTTGTT
**
21935 TTTTGCCTTTTTTTTTGTTTTTTTGTTTTTGTT
1 TTTTGCCTTTTTTGCTGTTTTTTTGTTTTTGTT
21968 TTTT
1 TTTT
21972 TGAAGAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 25 0.78
33 6 0.19
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (33 bp):
TTTTGCCTTTTTTGCTGTTTTTTTGTTTTTGTT
Found at i:24836 original size:22 final size:22
Alignment explanation
Indices: 24808--24886 Score: 131
Period size: 22 Copynumber: 3.6 Consensus size: 22
24798 ACATCTACAT
24808 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
* *
24830 TCTTCAAATATGGTAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
24852 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
24874 TTTTCAAAGATGA
1 TCTTCAAAGATGA
24887 AAGCCTTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:25620 original size:45 final size:45
Alignment explanation
Indices: 25555--25864 Score: 431
Period size: 45 Copynumber: 6.8 Consensus size: 45
25545 CTATTTCCCA
*
25555 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
25600 CATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * *
25645 CATCTATAAGCCCTTCAGTGCACGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
25690 CATCTGTAAGCCCTTCATTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * *
25735 CAACTATAAGCCCTTCAGTGCATGATGTTTTCAAAAAAACATTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC---AAAACCTTCGGGT
* * * *
25783 TATCCGTAAGACCTTCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGGT
* * *
25830 CATCCGTAAGACCTTCAGTGCAAGATGTTTTCAAA
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
25865 TGAGATTTTA
Statistics
Matches: 238, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
45 154 0.65
46 8 0.03
47 38 0.16
48 38 0.16
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Found at i:26123 original size:3 final size:3
Alignment explanation
Indices: 26115--26189 Score: 78
Period size: 3 Copynumber: 25.0 Consensus size: 3
26105 TTTTTTCATT
* * * * *
26115 TTA TTA TTA TTA TAA TTA TTT TTA TAA ATA TTA TTA TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
26163 TTA TTA TTA TAA ATA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
26190 CAAGCCAAAT
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:26254 original size:21 final size:21
Alignment explanation
Indices: 26228--26289 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
26218 AATTACAAAT
26228 GAGGCCCAGATCTAGAACCCG
1 GAGGCCCAGATCTAGAACCCG
* * *
26249 GAGGCCCAGATCCAAAACCTG
1 GAGGCCCAGATCTAGAACCCG
*
26270 GAGGCCCATATCTAG-ACCCG
1 GAGGCCCAGATCTAGAACCCG
26290 ACCCAACACC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 4 0.12
21 30 0.88
ACGTcount: A:0.29, C:0.34, G:0.26, T:0.11
Consensus pattern (21 bp):
GAGGCCCAGATCTAGAACCCG
Found at i:27563 original size:14 final size:14
Alignment explanation
Indices: 27525--27567 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
27515 TATATTAATC
**
27525 TATTTTTTAATAAA
1 TATTTTTTAATATT
*
27539 TGTTTTATTAATATT
1 TATTTT-TTAATATT
27554 TATTTTTTAATATT
1 TATTTTTTAATATT
27568 AAGAAAAGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
TATTTTTTAATATT
Found at i:30524 original size:29 final size:29
Alignment explanation
Indices: 30491--30705 Score: 134
Period size: 29 Copynumber: 7.3 Consensus size: 29
30481 TACTCAAAAA
*
30491 AATGTCGCATTTTTTAAAATAATTCCCAT
1 AATGTCACATTTTTTAAAATAATTCCCAT
*
30520 AATGTCA-TTTTTTTCAAAATAATTCCCA-
1 AATGTCACATTTTTT-AAAATAATTCCCAT
* * *
30548 AATTATCACCTTTTTTTAAAAATAATTCCCAA
1 AA-TGTCA-CATTTTTT-AAAATAATTCCCAT
* * *
30580 AATGTCACATTTTTCACACA-AATTCTCAT
1 AATGTCACATTTTTTA-AAATAATTCCCAT
* * *
30609 AATGTCACCTTTTTCACAAA-AATTCCCAG
1 AATGTCACATTTTTTA-AAATAATTCCCAT
* * * *
30638 AATGTCACTTTTTTTTAACAAAAAATCCCAG
1 AATGTCAC-ATTTTTTAA-AATAATTCCCAT
* * * * *
30669 AATGTTACCTTTTTCACTAA-AATTCCCAG
1 AATGTCACATTTTTTA-AAATAATTCCCAT
30698 AATGTCAC
1 AATGTCAC
30706 TAGGTCGGGT
Statistics
Matches: 153, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
28 8 0.05
29 80 0.52
30 24 0.16
31 39 0.25
32 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (29 bp):
AATGTCACATTTTTTAAAATAATTCCCAT
Found at i:30570 original size:31 final size:27
Alignment explanation
Indices: 30500--30580 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 27
30490 AAATGTCGCA
*
30500 TTTTTTAAAATAATTCCCATAATGTCAT
1 TTTTTTAAAATAATTCCCA-AATATCAT
30528 TTTTTTCAAAATAATTCCCAAATTATCACCT
1 TTTTTT-AAAATAATTCCCAAA-TATCA--T
30559 TTTTTTAAAAATAATTCCCAAA
1 TTTTTT-AAAATAATTCCCAAA
30581 ATGTCACATT
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
28 8 0.17
29 17 0.36
31 22 0.47
ACGTcount: A:0.38, C:0.17, G:0.01, T:0.43
Consensus pattern (27 bp):
TTTTTTAAAATAATTCCCAAATATCAT
Found at i:30574 original size:60 final size:59
Alignment explanation
Indices: 30500--30704 Score: 168
Period size: 60 Copynumber: 3.5 Consensus size: 59
30490 AAATGTCGCA
*
30500 TTTTTT-AAAATAATTCCCATAATGTCATTTTTTTCA-AAATAATTCCCA-AATTATCACC
1 TTTTTTAAAAATAATTCCCAAAATGTCATTTTTTTCACAAA-AATTCCCATAA-TATCACC
** * * *
30558 TTTTTTTAAAAATAATTCCCAAAATGTCACATTTTTCACACAAATTCTCATAATGTCACC
1 -TTTTTTAAAAATAATTCCCAAAATGTCATTTTTTTCACAAAAATTCCCATAATATCACC
* * * * * * * *
30618 TTTTTCACAAA-AATTCCCAGAATGTCACTTTTTTTTAACAAAAAATCCCAGAATGTTACC
1 TTTTTTAAAAATAATTCCCAAAATGTCA--TTTTTTTCACAAAAATTCCCATAATATCACC
* ** *
30678 TTTTTCACTAA-AATTCCCAGAATGTCA
1 TTTTTTAAAAATAATTCCCAAAATGTCA
30705 CTAGGTCGGG
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
58 15 0.12
59 15 0.12
60 89 0.72
61 4 0.03
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.39
Consensus pattern (59 bp):
TTTTTTAAAAATAATTCCCAAAATGTCATTTTTTTCACAAAAATTCCCATAATATCACC
Found at i:30651 original size:89 final size:88
Alignment explanation
Indices: 30489--30705 Score: 242
Period size: 89 Copynumber: 2.4 Consensus size: 88
30479 TATACTCAAA
* * * **
30489 AAAATGTCGCATTTTTTAAAATAATTCCCATAATGTCATTTTTTTCAAAATAATTCCCAAATTAT
1 AAAATGTCACATTTTTCACAA-AATTCCCATAATGTCACCTTTTTCAAAATAATTCCCAAATTAT
*
30554 CACCTTTTTTTAA-AAATAATTCCC
65 CACCTTTTTTTAACAAA-AAATCCC
*
30578 AAAATGTCACATTTTTCACACAAATTCTCATAATGTCACCTTTTTCACAAA-AATTCCCAGAA-T
1 AAAATGTCACATTTTTCACA-AAATTCCCATAATGTCACCTTTTTCA-AAATAATTCCCA-AATT
* *
30641 GTCACTTTTTTTTAACAAAAAATCCC
63 ATCACCTTTTTTTAACAAAAAATCCC
* * * *
30667 AGAATGTTACCTTTTTCACTAAAATTCCCAGAATGTCAC
1 AAAATGTCACATTTTTCAC-AAAATTCCCATAATGTCAC
30706 TAGGTCGGGT
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
89 99 0.91
90 10 0.09
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.37
Consensus pattern (88 bp):
AAAATGTCACATTTTTCACAAAATTCCCATAATGTCACCTTTTTCAAAATAATTCCCAAATTATC
ACCTTTTTTTAACAAAAAATCCC
Found at i:30740 original size:17 final size:17
Alignment explanation
Indices: 30709--30753 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
30699 ATGTCACTAG
30709 GTCGGGTCAGGTCAACGA
1 GTCGGGTC-GGTCAACGA
*
30727 GTCGGGTCGGTCAACGG
1 GTCGGGTCGGTCAACGA
30744 GTCGGGTCGG
1 GTCGGGTCGG
30754 GCCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.13, C:0.22, G:0.47, T:0.18
Consensus pattern (17 bp):
GTCGGGTCGGTCAACGA
Found at i:38092 original size:28 final size:30
Alignment explanation
Indices: 38037--38147 Score: 100
Period size: 30 Copynumber: 3.8 Consensus size: 30
38027 CACATTCTAA
*
38037 AATTCCCAAAATGTCATCTTTTTTCAAAAT
1 AATTACCAAAATGTCATCTTTTTTCAAAAT
*
38067 AATTACCATAATGTCA-C-TTTTTCAAAAT
1 AATTACCAAAATGTCATCTTTTTTCAAAAT
* * * * ***
38095 AATTCCCAAATTATCACCTTTTTTTGGAAT
1 AATTACCAAAATGTCATCTTTTTTCAAAAT
* * *
38125 AATTCCCAAAATGTTACCTTTTT
1 AATTACCAAAATGTCATCTTTTT
38148 CACAAAAAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 23 0.34
29 2 0.03
30 42 0.63
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (30 bp):
AATTACCAAAATGTCATCTTTTTTCAAAAT
Found at i:38127 original size:58 final size:59
Alignment explanation
Indices: 38037--38224 Score: 156
Period size: 58 Copynumber: 3.3 Consensus size: 59
38027 CACATTCTAA
* * *
38037 AATTCCCAAAATGTCATCTTTTTTCAAAATAATTACCATAATGTCA-CTTTTTCAAAAT
1 AATTCCCAAAATATCACCTTTTTTCAAAATAATTACCAAAATGTCACCTTTTTCAAAAT
* *** * *
38095 AATTCCCAAATTATCACCTTTTTTTGGAATAATTCCCAAAATGTTACCTTTTTCACAAA-
1 AATTCCCAAAATATCACCTTTTTTCAAAATAATTACCAAAATGTCACCTTTTTCA-AAAT
* ** * * * * *
38154 AAATCCCGGAATATCA-CTTTTTT-ACAA-AATT-CCTAGAATGTCACTTTTTTTACAA-
1 AATTCCCAAAATATCACCTTTTTTCAAAATAATTACC-AAAATGTCACCTTTTTCAAAAT
38209 AATTCCCAAAATATCA
1 AATTCCCAAAATATCA
38225 TCTATTTCAC
Statistics
Matches: 104, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
55 17 0.16
56 18 0.17
57 2 0.02
58 44 0.42
59 20 0.19
60 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.38
Consensus pattern (59 bp):
AATTCCCAAAATATCACCTTTTTTCAAAATAATTACCAAAATGTCACCTTTTTCAAAAT
Found at i:38203 original size:29 final size:29
Alignment explanation
Indices: 38035--38255 Score: 120
Period size: 28 Copynumber: 7.7 Consensus size: 29
38025 TCCACATTCT
* *
38035 AAAATTCCCAAAATGTCA-TCTTTTTTCAA
1 AAAATTCCCAGAATGTCACTCTTTTTT-AC
* * * *
38064 AATAATTACCATAATGTCA--CTTTTTCAA
1 AA-AATTCCCAGAATGTCACTCTTTTTTAC
* **
38092 AATAATTCCCA-AATTATCAC-CTTTTTTTGG
1 AA-AATTCCCAGAA-TGTCACTC-TTTTTTAC
* * *
38122 AATAATTCCCAAAATGTTAC-CTTTTTCAC
1 AA-AATTCCCAGAATGTCACTCTTTTTTAC
* * *
38151 AAAAAATCCCGGAATATCA--CTTTTTTAC
1 -AAAATTCCCAGAATGTCACTCTTTTTTAC
*
38179 AAAATTCCTAGAATGTCACT-TTTTTTAC
1 AAAATTCCCAGAATGTCACTCTTTTTTAC
* * * *
38207 AAAATTCCCAAAATATCA-TCTATTTCAC
1 AAAATTCCCAGAATGTCACTCTTTTTTAC
38235 TAAAATTCCCAGAATGTCACT
1 -AAAATTCCCAGAATGTCACT
38256 GGATCGGGTC
Statistics
Matches: 151, Mismatches: 30, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
27 17 0.11
28 53 0.35
29 41 0.27
30 38 0.25
31 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.05, T:0.37
Consensus pattern (29 bp):
AAAATTCCCAGAATGTCACTCTTTTTTAC
Found at i:38278 original size:13 final size:13
Alignment explanation
Indices: 38260--38284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38250 GTCACTGGAT
38260 CGGGTCGGGTCAA
1 CGGGTCGGGTCAA
38273 CGGGTCGGGTCA
1 CGGGTCGGGTCA
38285 GACCGGTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.48, T:0.16
Consensus pattern (13 bp):
CGGGTCGGGTCAA
Found at i:38300 original size:19 final size:19
Alignment explanation
Indices: 38276--38347 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
38266 GGGTCAACGG
38276 GTCGGGTCAGACCGGTCAA
1 GTCGGGTCAGACCGGTCAA
38295 GTCGGGTCAGACCGGTCAA
1 GTCGGGTCAGACCGGTCAA
** *
38314 GTCGATTCAGATCGGTCAA
1 GTCGGGTCAGACCGGTCAA
* * *
38333 ATCGGTTCGGACCGG
1 GTCGGGTCAGACCGG
38348 CCAAACCGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 46 1.00
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (19 bp):
GTCGGGTCAGACCGGTCAA
Found at i:45484 original size:12 final size:12
Alignment explanation
Indices: 45463--45537 Score: 53
Period size: 12 Copynumber: 5.8 Consensus size: 12
45453 TCAGAACAAA
45463 AAAG-AAAAAAC
1 AAAGAAAAAAAC
45474 AAAGAAAAAAAC
1 AAAGAAAAAAAC
*
45486 AAAGAGAAAATTAAA
1 AAAGA-AAAA--AAC
45501 AAGAGAAACAAAAAC
1 AA-AG-AA-AAAAAC
* *
45516 AAAGGAAAAAAT
1 AAAGAAAAAAAC
*
45528 GAAGAAAAAA
1 AAAGAAAAAA
45538 GAAGACAAGA
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
11 4 0.08
12 25 0.49
13 5 0.10
14 2 0.04
15 8 0.16
16 3 0.06
17 4 0.08
ACGTcount: A:0.77, C:0.05, G:0.13, T:0.04
Consensus pattern (12 bp):
AAAGAAAAAAAC
Found at i:45493 original size:14 final size:14
Alignment explanation
Indices: 45467--45526 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
45457 AACAAAAAAG
45467 AAAAAAC-AA-AGA
1 AAAAAACAAAGAGA
45479 AAAAAACAAAGAGA
1 AAAAAACAAAGAGA
*
45493 AAATTAA-AAAGAGAA
1 AAA-AAACAAAGAG-A
45508 ACAAAAACAAAG-GA
1 A-AAAAACAAAGAGA
45522 AAAAA
1 AAAAA
45527 TGAAGAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
12 7 0.17
13 6 0.15
14 14 0.35
15 7 0.17
16 6 0.15
ACGTcount: A:0.78, C:0.07, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAAAACAAAGAGA
Found at i:46641 original size:32 final size:32
Alignment explanation
Indices: 46593--46680 Score: 115
Period size: 32 Copynumber: 2.8 Consensus size: 32
46583 GGAACAATGT
* *
46593 GGGCATCTTCGAAGATTCAACATCAAATATTG
1 GGGCATCTTTGGAGATTCAACATCAAATATTG
* *
46625 GGGCATTTTTGGAGATTCAACAAT-GAATATTG
1 GGGCATCTTTGGAGATTCAAC-ATCAAATATTG
*
46657 GGGCATCTTTGGGGATTCAACATC
1 GGGCATCTTTGGAGATTCAACATC
46681 CTGATGTGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
31 2 0.04
32 44 0.92
33 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (32 bp):
GGGCATCTTTGGAGATTCAACATCAAATATTG
Found at i:48377 original size:2 final size:2
Alignment explanation
Indices: 48364--48403 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
48354 TCTAACCGAA
*
48364 AT AT AC AT AT AT AT -T AT AT AT AT AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48404 GTATTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48386 original size:13 final size:12
Alignment explanation
Indices: 48370--48419 Score: 59
Period size: 13 Copynumber: 4.1 Consensus size: 12
48360 CGAAATATAC
48370 ATATATATTATAT
1 ATATATATTAT-T
48383 ATATATATATATT
1 ATATATAT-TATT
48396 ATATATATGTATT
1 ATATATAT-TATT
48409 AT-TAT-TTATT
1 ATATATATTATT
48419 A
1 A
48420 ACCAATGTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
10 5 0.14
11 1 0.03
12 3 0.09
13 23 0.66
14 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
ATATATATTATT
Found at i:48390 original size:17 final size:17
Alignment explanation
Indices: 48364--48413 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
48354 TCTAACCGAA
*
48364 ATATACATATATATTAT
1 ATATATATATATATTAT
48381 ATATATATATATATTAT
1 ATATATATATATATTAT
*
48398 ATATATGTAT-TATTAT
1 ATATATATATATATTAT
48414 TTATTAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 6 0.19
17 25 0.81
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATATATATATATTAT
Found at i:49629 original size:2 final size:2
Alignment explanation
Indices: 49622--49659 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
49612 ATTTATATGC
49622 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49660 CTTTTTTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51574 original size:17 final size:17
Alignment explanation
Indices: 51554--51590 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51544 TTGAGAACTT
51554 ATTGATTTATT-TTATAG
1 ATTGATTTATTCTTA-AG
51571 ATTGATTTATTCTTAAG
1 ATTGATTTATTCTTAAG
51588 ATT
1 ATT
51591 TTGTGGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.57
Consensus pattern (17 bp):
ATTGATTTATTCTTAAG
Found at i:56661 original size:18 final size:19
Alignment explanation
Indices: 56629--56672 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 19
56619 CAACGGTCAA
56629 CGGTCAGGTCAGGTCGGGT
1 CGGTCAGGTCAGGTCGGGT
*
56648 CGGTC-GGTCGGGTCGGGT
1 CGGTCAGGTCAGGTCGGGT
56666 CGGTCAG
1 CGGTCAG
56673 ACCGGTTCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.07, C:0.23, G:0.50, T:0.20
Consensus pattern (19 bp):
CGGTCAGGTCAGGTCGGGT
Found at i:67556 original size:83 final size:80
Alignment explanation
Indices: 67392--67596 Score: 275
Period size: 83 Copynumber: 2.5 Consensus size: 80
67382 CTTGAGTGAA
* *
67392 ATAATTTAAACAACTTTTAAAAAATGGGTGAAATAGTAGTGCATTATCATCTTCTGTAACTTTTC
1 ATAATTTAAACAACTTTTAGAAAA-GGGTGAAATAGTGGTGCATTATCATCTTCTGTAACTTTTC
67457 AGAGGTCATTCAATGC
65 AGAGGTCATTCAATGC
* * * *
67473 ATAATTTAAATAACTTTTCAGAAAACGGGTGAAATAGTGGTGCATTATCATATTTTTTTAACTTT
1 ATAATTTAAACAACTTTT-AGAAAA-GGGTGAAATAGTGGTGCATTATCAT-CTTCTGTAACTTT
* *
67538 TTAGAGGTCATTTAATGC
63 TCAGAGGTCATTCAATGC
*
67556 ATAATTTAAACAACATTTTAGACAAAGGATGAAATAGTGGT
1 ATAATTTAAACAAC-TTTTAGA-AAAGGGTGAAATAGTGGT
67597 ATCTCATCAC
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
81 17 0.16
82 29 0.27
83 56 0.51
84 7 0.06
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (80 bp):
ATAATTTAAACAACTTTTAGAAAAGGGTGAAATAGTGGTGCATTATCATCTTCTGTAACTTTTCA
GAGGTCATTCAATGC
Found at i:70347 original size:13 final size:13
Alignment explanation
Indices: 70329--70354 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70319 TCATTATAGT
70329 CTATAATATAGAA
1 CTATAATATAGAA
70342 CTATAATATAGAA
1 CTATAATATAGAA
70355 ACCCCCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
CTATAATATAGAA
Found at i:73151 original size:3 final size:3
Alignment explanation
Indices: 73143--73216 Score: 141
Period size: 3 Copynumber: 25.0 Consensus size: 3
73133 TTGCTATTGT
73143 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
73191 TTA -TA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
73217 GGCTTAATAG
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 68 0.97
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:74051 original size:3 final size:3
Alignment explanation
Indices: 74043--74080 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
74033 TATTCAAGTC
74043 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74081 ACAAATCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:77466 original size:2 final size:2
Alignment explanation
Indices: 77459--77531 Score: 52
Period size: 2 Copynumber: 39.5 Consensus size: 2
77449 AGTTATTATT
*
77459 TA TA TA TA TA TA TA TA TA TA TT TA TA -A CTA T- TA T- TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
** *
77498 T- TA T- TA -A CG TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77532 TTTATATTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
1 7 0.12
2 48 0.86
3 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77687 original size:2 final size:2
Alignment explanation
Indices: 77680--77704 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
77670 TTTTATTTAG
77680 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
77705 TTGTTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77804 original size:14 final size:13
Alignment explanation
Indices: 77733--77806 Score: 53
Period size: 14 Copynumber: 5.6 Consensus size: 13
77723 TATATTCATC
77733 TTATTTTT-TTAT
1 TTATTTTTCTTAT
* *
77745 TGACTTTATCTTAT
1 TTA-TTTTTCTTAT
* *
77759 CTTGTTCTTCTTAT
1 -TTATTTTTCTTAT
* *
77773 TTGTTTTT-TTAA
1 TTATTTTTCTTAT
77785 TTATTTTATCTTAT
1 TTATTTT-TCTTAT
77799 TTATTTTT
1 TTATTTTT
77807 GTCACACTTT
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
12 11 0.23
13 13 0.28
14 22 0.47
15 1 0.02
ACGTcount: A:0.16, C:0.08, G:0.04, T:0.72
Consensus pattern (13 bp):
TTATTTTTCTTAT
Found at i:89380 original size:106 final size:106
Alignment explanation
Indices: 88954--89903 Score: 1450
Period size: 106 Copynumber: 9.0 Consensus size: 106
88944 GGAAGATATC
* * *
88954 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA-CGACTGGTTGT---C-AACAACTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAACTTCC
89014 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
89056 ACTCCAGACAATGCAAGTTC-ACTTCACGACAAAGGGACCGTTAGTTGTCAAC-AACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
89119 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
89160 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
89224 AATTTCAGAGCCAATTTCAACTTCATAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
89265 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
89330 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
89371 ACTCCAGACAACGCAAATTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
89436 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
89477 ACTCCAGACGACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAATAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
89542 AATTTCAGAGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
89583 ACTCCAGACGACGCAAGTTCAACTTCAAGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
89648 AATTCCAGAGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
89689 ACTCAAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGTTGGTTGTCAACAAACAATTTCCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
89754 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * **
89795 ACTCCATACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
89860 AGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
89901 ACT
1 ACT
89904 TGGAAGGGGC
Statistics
Matches: 785, Mismatches: 56, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
101 21 0.03
102 19 0.02
104 72 0.09
105 131 0.17
106 542 0.69
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:95369 original size:29 final size:29
Alignment explanation
Indices: 95327--95383 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
95317 ATAAACTCAT
95327 AACTCGCTTACTAAAGAACTGTCACCCAC
1 AACTCGCTTACTAAAGAACTGTCACCCAC
95356 AACTCGCTTACTAAAGAACTGTCACCCA
1 AACTCGCTTACTAAAGAACTGTCACCCA
95384 AGGTCTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.35, C:0.33, G:0.11, T:0.21
Consensus pattern (29 bp):
AACTCGCTTACTAAAGAACTGTCACCCAC
Done.