genome.fa.s2418.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002418.1 Hibiscus syriacus cultivar Beakdansim tig00004945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  225670

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930--6974	20	2.4	19	81	7	56	40	6	26	26	1.81
7115--7189	36	2.1	35	85	7	98	52	4	0	44	1.20
8321--8524	66	3.1	66	93	0	338	11	42	16	29	1.84
16086--16132	21	2.2	21	92	0	76	55	21	2	21	1.54
20917--20941	7	3.6	7	100	0	50	32	0	0	68	0.90
26040--26077	18	2.1	18	90	0	58	47	7	5	39	1.55
26407--26567	61	2.7	58	73	10	153	45	4	16	33	1.69
31825--31910	32	2.6	33	73	15	88	36	11	2	50	1.52
32169--32228	31	2.0	28	84	9	75	51	8	13	26	1.69
39661--39700	21	1.9	21	94	0	71	30	15	7	47	1.72
39695--39793	33	3.0	33	94	1	164	32	7	15	45	1.73
39779--39833	13	4.2	13	75	13	58	34	3	12	49	1.59
40240--40283	17	2.6	17	78	3	54	31	9	9	50	1.65
40385--40434	21	2.4	21	96	0	91	38	22	24	16	1.93
58140--58198	25	2.2	27	91	8	95	38	6	0	54	1.27
58532--58708	84	2.1	85	93	1	302	48	3	6	40	1.48
61834--62062	123	1.9	123	85	1	325	24	15	18	41	1.89
63240--63794	114	4.9	113	87	3	701	28	24	25	22	2.00
67632--67680	13	3.6	13	73	10	53	22	18	16	42	1.88
73935--73970	16	2.2	16	95	0	63	33	5	2	58	1.36
73894--73981	40	2.1	42	83	4	108	31	6	2	59	1.36
78750--78776	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80415--80489	37	2.0	37	82	10	89	52	1	2	44	1.23
81263--81320	29	2.0	30	90	6	93	36	8	5	50	1.56
81959--82010	25	2.1	25	82	7	61	55	1	1	40	1.22
83840--83865	4	6.5	4	100	0	52	76	0	0	23	0.78
86551--86591	22	1.9	21	85	14	57	56	4	2	36	1.34
88717--88785	26	2.7	26	97	0	129	36	8	5	49	1.58
89005--89355	186	1.9	187	91	4	584	45	8	3	42	1.52
99151--99182	17	1.9	17	93	6	57	34	0	0	65	0.93
105291--105412	43	2.8	43	94	0	208	40	5	4	50	1.45
106812--106874	32	2.0	32	90	0	99	49	17	6	26	1.71
107094--107212	31	3.6	30	70	18	94	50	10	12	26	1.72
106956--107230	68	4.0	68	90	1	444	48	11	13	26	1.76
125714--125747	17	2.0	17	100	0	68	47	17	11	23	1.81
126945--127026	30	2.7	30	81	5	76	30	3	3	62	1.30
127127--127197	29	2.4	30	82	15	87	43	5	0	50	1.25
129317--129387	4	16.8	4	75	13	54	45	21	2	30	1.66
136200--136236	17	2.2	17	90	0	56	32	0	0	67	0.91
136187--136236	20	2.5	20	87	9	66	32	0	0	68	0.90
145686--145865	98	1.8	98	96	0	333	28	21	21	29	1.98
148531--148978	110	4.1	108	85	5	593	28	13	11	46	1.78
148531--149298	110	7.2	105	76	11	588	29	12	11	46	1.77
148876--149068	90	2.1	90	93	1	325	24	14	11	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148970--149311	111	3.1	111	89	1	506	29	11	10	47	1.74
149482--149629	73	2.0	73	86	2	208	31	12	13	42	1.81
153718--153862	57	2.6	53	80	12	141	55	8	0	36	1.30
153763--153805	22	2.0	22	100	0	86	55	4	0	39	1.20
153767--153875	31	4.2	26	65	23	75	55	7	0	36	1.28
153765--153813	22	2.2	22	88	3	71	59	6	0	34	1.22
153812--153879	26	2.8	23	82	12	84	54	8	0	36	1.32
153815--154041	103	2.2	101	88	5	339	52	10	0	36	1.39
153896--153983	23	3.8	22	72	12	77	52	12	1	34	1.47
153967--154106	32	4.7	32	80	17	167	52	8	0	38	1.32
154000--154042	22	2.0	22	95	0	77	53	6	0	39	1.28
154001--154049	22	2.2	22	88	3	71	57	6	0	36	1.24
153847--154068	54	4.2	54	81	12	289	53	9	0	36	1.37
154026--154082	18	3.4	17	72	18	57	54	8	0	36	1.32
154044--154180	15	8.5	15	72	17	105	51	4	0	43	1.26
154022--154165	65	2.2	66	83	13	172	51	5	0	42	1.30
154022--154165	32	4.3	33	81	12	163	51	5	0	42	1.30
154109--154180	31	2.4	31	90	2	110	51	0	1	47	1.09
154286--154334	21	2.3	21	89	0	80	38	18	28	14	1.90
167414--167438	2	12.5	2	100	0	50	48	0	0	52	1.00
168430--168560	52	2.6	52	95	2	230	29	8	25	36	1.85
176831--176912	37	2.4	31	73	21	74	48	2	1	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177376--177416	19	2.1	20	86	4	57	4	9	12	73	1.24
178816--178932	57	2.0	58	88	3	173	33	5	23	37	1.77
180140--180278	49	2.9	49	86	5	192	21	25	14	38	1.91
183661--183704	22	2.0	22	82	8	54	38	15	25	20	1.92
184305--184331	2	13.5	2	100	0	54	51	0	0	48	1.00
184800--184833	3	11.3	3	93	0	59	61	0	0	38	0.96
193431--193458	6	4.7	6	100	0	56	35	35	0	28	1.58
193423--193469	18	2.6	18	72	0	58	31	42	8	17	1.79
193988--194040	6	8.8	6	89	0	61	7	13	49	30	1.69
203309--203721	230	1.8	230	90	3	645	28	13	17	40	1.87
205018--205324	161	1.9	160	94	3	546	26	32	18	22	1.97
218946--218976	2	16.0	2	93	6	55	51	0	0	48	1.00

Tables:   1

The End!