genome.fa.s2420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002420.1 Hibiscus syriacus cultivar Beakdansim tig00004948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97714

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3311--3355	14	3.3	14	78	6	56	31	0	2	66	1.04
4516--4703	97	1.9	99	88	9	283	30	25	20	23	1.98
14409--14434	2	13.0	2	100	0	52	0	50	0	50	1.00
17289--17374	45	1.9	45	90	0	136	58	12	9	19	1.62
21179--21207	13	2.1	14	93	6	51	58	0	0	41	0.98
21952--21993	21	2.1	19	86	8	57	73	0	2	23	0.94
28248--28347	50	2.0	50	100	0	200	20	16	14	50	1.78
33951--34063	20	5.6	20	84	4	145	41	16	23	17	1.89
33951--34063	41	2.8	40	90	4	172	41	16	23	17	1.89
34052--34125	20	3.7	20	92	0	112	27	28	20	24	1.99
33951--34068	61	1.9	60	86	5	164	40	16	23	18	1.91
33968--34063	41	2.3	41	96	0	174	42	16	23	16	1.88
34313--34356	22	2.0	22	95	0	79	20	45	15	18	1.85
34600--34643	20	2.2	20	87	0	61	11	18	20	50	1.77
34780--34834	25	2.2	24	78	15	58	20	9	18	52	1.71
35963--36007	18	2.5	18	88	0	72	26	44	15	13	1.83
36492--36549	14	3.9	14	75	16	62	6	17	27	48	1.72
36487--36565	32	2.4	33	91	2	133	8	18	25	46	1.78
36550--36605	20	2.8	19	86	7	76	16	25	23	35	1.94
38474--38509	14	2.6	14	90	0	54	30	0	22	47	1.52
38593--38629	19	1.9	19	88	0	56	43	24	18	13	1.86
38597--38674	19	4.4	17	81	15	63	46	20	19	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38626--38693	19	3.8	19	85	14	101	47	17	22	13	1.82
38712--38769	20	2.9	20	97	0	107	15	22	24	37	1.93
39800--39853	24	2.2	24	90	0	81	24	16	20	38	1.92
42332--42458	33	3.8	33	81	4	166	41	18	24	15	1.89
42399--42462	19	3.6	19	72	20	66	40	20	26	12	1.88
42333--42465	66	2.0	66	91	0	212	40	18	24	17	1.91
42458--42500	20	2.2	20	87	4	61	16	18	23	41	1.89
42641--42677	14	2.6	14	91	0	65	45	24	0	29	1.53
44033--44099	21	3.2	21	68	4	55	19	20	35	23	1.95
44033--44155	42	2.9	41	79	7	113	22	18	36	21	1.95
46182--46280	33	3.0	33	87	1	144	39	25	24	11	1.88
46157--46302	19	8.1	19	73	17	114	42	21	23	12	1.87
46298--46342	19	2.4	19	84	0	63	8	15	22	53	1.69
46868--46907	20	2.0	20	100	0	80	30	20	30	20	1.97
46929--46982	20	2.7	20	94	0	90	29	18	20	31	1.96
46869--46985	61	1.9	61	83	0	153	26	17	22	33	1.96
46869--47003	61	2.2	61	80	2	146	25	20	22	32	1.97
48258--48290	16	2.1	16	100	0	66	60	0	0	39	0.97
48347--48409	26	2.5	24	80	12	65	44	7	3	44	1.49
48524--48583	19	3.0	20	75	17	61	60	5	0	35	1.19
65287--65456	91	1.9	91	95	2	306	40	22	5	32	1.76
83799--83823	5	5.0	5	100	0	50	0	0	20	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84473--84517	22	2.0	22	95	0	81	57	2	4	35	1.31
84487--84522	16	2.2	16	90	0	54	61	0	2	36	1.11
88053--88125	2	37.0	2	97	2	139	49	0	0	50	1.00
91119--91420	82	3.7	82	92	0	498	26	17	20	35	1.95

Tables:   1

The End!