genome.fa.s2421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002421.1 Hibiscus syriacus cultivar Beakdansim tig00004949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129229

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487--700	107	2.0	107	95	0	383	32	27	22	18	1.97
939--973	18	1.9	18	94	0	61	37	5	28	28	1.80
14080--14139	29	2.1	29	100	0	120	13	31	36	18	1.89
14179--14249	17	4.4	16	82	7	90	21	9	52	16	1.73
14189--14255	16	4.2	16	81	7	82	20	7	56	14	1.62
14179--14249	33	2.2	32	92	2	115	21	9	52	16	1.73
14187--14250	15	4.1	15	82	9	83	20	7	54	17	1.67
14815--14858	21	2.1	21	91	0	70	29	0	15	54	1.42
14835--14895	28	2.2	28	91	5	97	31	0	11	57	1.34
15393--15436	21	2.2	20	84	8	54	36	0	9	54	1.32
15697--15755	26	2.3	25	75	18	66	47	8	3	40	1.51
18637--19101	26	18.6	26	77	11	407	43	2	10	43	1.51
18579--19158	124	4.7	124	98	0	1126	43	2	10	44	1.51
18634--19101	150	3.3	145	82	14	436	43	2	10	43	1.52
18965--19020	19	3.1	19	77	12	64	35	0	14	50	1.43
19304--19386	24	3.3	24	73	20	89	38	3	9	48	1.54
19361--19393	17	1.9	17	93	0	57	36	6	12	45	1.66
21542--21572	15	2.1	14	94	5	53	54	6	0	38	1.26
21547--21593	16	3.0	16	84	9	53	59	10	0	29	1.31
21748--21880	45	3.0	45	80	14	136	48	12	0	39	1.40
21820--21908	41	2.2	40	78	8	90	46	10	1	42	1.45
22043--22095	21	2.5	21	96	0	97	1	35	0	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22066--22097	17	1.9	16	93	6	55	0	37	0	62	0.95
22100--22145	23	2.0	23	100	0	92	8	39	4	47	1.54
22158--22209	25	2.1	25	100	0	104	26	34	11	26	1.91
22381--22412	13	2.5	13	100	0	64	31	0	46	21	1.52
22413--22550	58	2.4	58	92	2	215	22	34	31	12	1.91
22413--22532	29	4.1	29	98	0	231	23	35	30	10	1.89
22598--22657	17	3.6	17	65	4	50	18	26	35	20	1.95
22573--22686	26	4.1	26	85	14	165	18	26	35	20	1.95
22573--22738	26	5.5	32	80	18	157	19	24	34	21	1.96
22571--22703	59	2.3	59	96	3	245	20	25	34	19	1.96
22674--22761	35	2.5	35	98	0	167	18	21	32	27	1.96
22756--22797	12	3.5	12	93	0	75	19	35	19	26	1.95
22806--22871	35	2.0	32	86	13	91	19	19	36	24	1.95
22884--22965	29	2.8	29	100	0	164	18	28	28	25	1.98
26804--26868	23	2.8	23	85	0	76	53	15	18	12	1.72
28487--28551	2	32.5	2	100	0	130	50	0	0	49	1.00
44663--44692	11	2.7	11	100	0	60	46	10	36	6	1.64
52995--53034	2	20.5	2	94	5	73	0	50	0	50	1.00
62500--62590	43	2.1	43	97	0	173	37	4	20	37	1.73
64599--64893	4	73.8	4	100	0	590	50	25	0	24	1.50
64895--64928	2	17.0	2	100	0	68	50	0	0	50	1.00
69215--69315	54	1.9	52	85	4	139	48	15	12	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78303--78366	31	2.1	31	85	5	85	39	9	14	37	1.78
78379--78437	26	2.3	25	88	8	91	37	0	5	57	1.21
78405--78443	17	2.3	17	86	0	51	38	0	5	56	1.22
96518--96574	30	1.9	30	86	10	82	54	0	1	43	1.10
101598--101671	32	2.3	32	78	13	82	37	14	8	39	1.76
115727--115771	20	2.4	19	81	7	56	40	6	26	26	1.81
117151--117355	66	3.1	66	94	0	347	11	41	17	29	1.84
121092--121145	24	2.3	24	87	3	74	38	11	18	31	1.86
125222--125268	21	2.2	21	92	0	76	55	21	2	21	1.54

Tables:   1

The End!