genome.fa.s2422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002422.1 Hibiscus syriacus cultivar Beakdansim tig00004957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101664

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2128--2175	25	1.9	25	83	8	62	62	0	2	35	1.07
5528--5936	51	8.0	51	87	2	554	36	26	18	18	1.94
20853--20877	12	2.1	12	100	0	50	56	0	0	44	0.99
20951--21003	19	2.7	20	79	8	63	54	3	0	41	1.18
21297--21444	59	2.5	59	77	12	167	35	18	2	43	1.64
21637--21748	29	3.8	29	72	15	86	51	5	9	33	1.57
21616--21747	60	2.2	60	82	5	160	50	6	9	34	1.60
21644--21759	60	1.9	60	82	3	144	53	6	8	31	1.58
30594--30656	31	2.0	31	81	6	74	46	6	3	44	1.45
40506--40535	15	2.0	15	93	0	51	23	33	16	26	1.96
48364--48415	20	2.6	20	96	0	95	38	26	13	21	1.90
48406--48503	21	4.8	20	74	10	65	36	21	19	22	1.95
48471--48819	20	17.5	20	84	4	418	34	26	18	20	1.95
49500--49546	24	2.0	24	83	8	60	27	14	19	38	1.91
49721--49745	12	2.1	12	100	0	50	72	0	28	0	0.86
52015--52337	19	18.4	19	79	16	378	46	18	20	14	1.83
52081--52359	70	4.0	71	86	6	424	46	17	20	15	1.84
52046--52359	52	6.0	52	84	8	438	46	17	21	14	1.84
52366--52448	19	4.6	19	81	15	113	14	24	18	43	1.87
52551--52590	14	2.8	14	88	3	62	42	22	0	35	1.54
54501--54546	20	2.4	19	85	3	56	47	30	10	10	1.73
54517--54634	19	6.8	18	73	18	99	46	25	19	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54556--54612	14	3.7	14	72	20	51	45	28	19	7	1.76
54538--54629	33	2.8	33	90	1	150	46	25	19	8	1.78
54647--54703	14	3.8	13	74	26	51	7	19	28	45	1.76
54630--54721	32	2.8	33	90	8	134	7	18	27	46	1.76
54661--54758	19	5.4	19	77	16	102	9	17	27	45	1.78
54802--55544	182	4.0	185	97	1	1403	46	19	12	21	1.83
54802--55544	92	8.1	93	96	3	1407	46	19	12	21	1.83
57248--57337	14	5.7	14	74	23	81	42	23	25	8	1.83
57240--57354	33	3.5	33	95	0	212	45	20	24	9	1.81
57247--57359	19	6.8	18	72	23	88	43	22	24	9	1.83
57371--57425	14	3.6	14	73	21	56	9	25	23	41	1.83
57355--57425	33	2.2	33	94	0	124	8	22	25	43	1.81
57366--57447	33	2.5	33	89	2	119	9	25	21	42	1.84
57378--57466	20	4.8	20	72	19	75	12	24	19	43	1.85
57546--57616	33	2.2	33	92	0	115	47	18	22	11	1.80
57797--57850	22	2.5	21	78	3	63	20	16	38	24	1.92
57996--58188	20	9.6	20	82	5	219	19	19	25	35	1.95
57996--58188	60	3.2	60	83	0	251	19	19	25	35	1.95
58244--58295	20	2.6	20	96	0	95	21	13	26	38	1.90
60200--60304	53	2.0	53	90	0	165	21	18	6	53	1.67
61282--61332	26	1.9	26	84	4	66	35	11	7	45	1.70
63784--63825	16	2.6	16	80	0	57	40	19	16	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66151--66289	60	2.3	60	78	2	145	38	4	22	34	1.74
81973--82109	40	3.4	40	80	11	124	40	24	16	18	1.90
82015--82105	20	4.6	19	84	11	87	42	19	17	19	1.89
82151--82183	16	2.1	16	94	0	57	33	6	21	39	1.78
82276--82327	20	2.6	21	87	6	72	42	23	17	17	1.89
82300--82392	20	4.7	20	75	2	89	39	18	18	23	1.92
82297--82392	40	2.4	40	89	0	156	40	17	17	23	1.91
86420--86467	23	2.1	23	88	7	71	45	6	2	45	1.40
89216--89315	15	6.9	15	68	11	55	40	4	41	15	1.65
98071--98144	37	2.0	36	87	7	105	52	4	0	43	1.20
100576--100620	22	2.1	22	83	4	56	17	2	2	77	0.97

Tables:   1

The End!