genome.fa.s2423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002423.1 Hibiscus syriacus cultivar Beakdansim tig00004958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115551

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2281--2343	30	2.1	31	90	3	101	28	15	19	36	1.92
3636--3673	19	2.0	19	90	10	60	52	26	5	15	1.64
6601--6731	66	2.0	65	95	1	235	25	21	12	40	1.88
7137--7243	20	5.8	20	67	22	81	35	13	17	33	1.89
8804--8839	12	3.0	12	95	0	63	8	47	0	44	1.33
8885--8914	15	1.9	16	93	6	53	0	20	3	76	0.92
13673--13851	60	3.0	60	76	5	175	31	21	3	43	1.71
13977--14105	60	2.1	61	80	8	140	43	5	21	29	1.75
15547--15596	3	16.7	3	95	0	82	62	0	0	38	0.96
16195--16243	24	2.1	23	85	11	64	61	2	0	36	1.08
16233--16283	24	2.1	24	85	7	68	64	0	1	33	1.05
16286--16322	2	18.5	2	100	0	74	48	0	0	51	1.00
17033--17059	2	13.5	2	100	0	54	48	0	0	51	1.00
17303--17332	2	15.0	2	100	0	60	50	0	0	50	1.00
16819--17349	274	2.0	268	85	6	712	53	9	12	25	1.67
17563--17610	24	2.0	24	87	0	69	35	16	14	33	1.89
21268--21395	42	3.2	41	85	5	172	27	16	20	35	1.94
21418--21509	44	2.1	44	85	2	123	27	18	18	35	1.94
25022--25421	41	9.8	41	73	9	271	34	18	16	31	1.93
29164--29233	21	3.3	21	71	0	77	34	27	14	24	1.94
29158--29251	42	2.2	42	98	0	179	30	25	19	24	1.98
29185--29251	21	3.2	21	71	0	71	31	28	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31458--31547	47	2.0	44	84	6	117	54	7	1	36	1.37
32738--32777	21	1.9	21	100	0	80	27	20	22	30	1.98
35700--35852	77	2.0	79	81	10	181	44	7	5	42	1.56
38556--38602	23	2.1	23	88	7	71	48	0	0	51	1.00
38824--38879	23	2.3	23	84	6	67	48	0	1	50	1.11
40641--40705	20	3.2	20	80	8	78	43	23	15	18	1.88
40831--40878	22	2.2	22	92	0	78	22	41	12	22	1.88
41137--41183	21	2.3	21	92	3	78	51	21	17	10	1.75
43688--43721	13	2.6	13	95	0	59	79	11	5	2	1.02
43936--44000	22	3.0	22	95	0	112	24	13	38	23	1.91
47296--47340	22	2.0	22	86	0	63	42	8	11	37	1.72
51879--52192	22	14.2	22	92	0	466	41	0	10	48	1.38
53697--53766	22	3.2	22	100	0	140	40	0	12	47	1.42
53790--53848	31	1.9	31	92	0	100	44	8	5	42	1.57
58948--58984	17	2.1	18	90	5	58	62	8	16	13	1.54
64816--65189	156	2.4	157	84	2	482	27	18	7	46	1.75
67252--67333	18	4.7	17	77	5	92	28	26	8	36	1.86
67252--67333	35	2.3	35	95	0	146	28	26	8	36	1.86
67522--68463	406	2.3	405	94	1	1663	33	16	15	33	1.91
70970--71006	17	2.1	18	90	5	58	37	8	2	51	1.46
74206--74245	19	2.1	19	100	0	80	55	15	5	25	1.60
85590--85633	19	2.3	19	96	0	79	40	25	20	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87380--87424	13	3.5	13	93	0	81	15	46	22	15	1.83
87398--87437	8	5.5	8	77	22	52	15	40	25	20	1.90
88747--88782	18	2.0	18	88	0	54	52	0	16	30	1.44
89909--90017	24	4.5	24	74	4	94	21	14	16	47	1.82
90178--90212	2	17.5	2	100	0	70	48	0	0	51	1.00
92167--92211	13	3.5	13	93	0	81	15	46	22	15	1.83
92185--92224	8	5.5	8	77	22	52	15	40	25	20	1.90
93531--93566	18	2.0	18	88	0	54	52	0	16	30	1.44
94692--94800	24	4.5	24	74	4	94	21	14	16	47	1.82
94961--95015	2	27.5	2	100	0	110	49	0	0	50	1.00
102482--102536	13	4.2	13	90	0	83	25	20	18	36	1.94
102508--102673	85	2.0	85	83	7	212	30	21	19	29	1.97
102760--102797	2	19.0	2	89	10	60	50	2	0	47	1.15
104963--104996	17	2.1	16	88	5	50	14	8	0	76	1.01
111331--111374	21	2.1	21	83	4	54	11	18	0	70	1.16
114167--114222	23	2.4	23	87	0	85	23	25	28	23	1.99

Tables:   1

The End!