genome.fa.s2424.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002424.1 Hibiscus syriacus cultivar Beakdansim tig00004961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141735

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7992--8024	2	16.5	2	100	0	66	48	0	0	51	1.00
21099--21128	6	5.0	6	91	0	51	20	0	63	16	1.31
25363--25412	15	3.3	15	85	0	73	8	18	64	10	1.48
29230--29291	2	31.0	2	100	0	124	50	0	0	50	1.00
32714--32768	23	2.4	23	87	0	83	27	18	14	40	1.89
33229--33270	20	2.1	20	100	0	84	57	0	14	28	1.38
36667--36699	9	3.7	9	95	0	57	72	0	27	0	0.85
45968--45993	7	3.7	7	100	0	52	61	11	0	26	1.30
46340--46386	4	12.0	4	78	13	53	70	0	2	27	0.99
46327--46383	27	2.0	29	87	12	84	64	0	5	29	1.15
47682--48551	112	7.7	112	91	3	1230	27	20	14	38	1.91
48484--48586	41	2.5	40	95	1	188	20	23	8	47	1.77
48142--48855	386	1.9	384	90	2	1137	28	19	12	39	1.89
48255--48816	270	2.1	272	95	1	1004	28	20	11	39	1.88
48371--48701	154	2.1	157	92	3	544	26	21	11	40	1.87
48527--48855	116	2.9	113	90	4	480	28	19	12	38	1.89
49253--49307	22	2.5	22	87	0	83	36	14	14	34	1.87
49675--49830	54	2.9	54	91	1	242	24	22	16	37	1.93
51937--52160	114	2.0	113	93	0	385	31	20	15	33	1.93
57711--57749	15	2.7	15	88	4	53	51	12	15	20	1.76
57711--57758	14	3.4	14	85	2	51	50	12	14	22	1.77
59812--59837	7	3.7	7	100	0	52	61	11	0	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60184--60230	4	12.0	4	78	13	53	70	0	2	27	0.99
60171--60227	27	2.0	29	87	12	84	64	0	5	29	1.15
63761--63794	16	2.0	17	88	11	52	32	2	0	64	1.08
63776--63835	27	2.2	26	80	8	66	30	0	1	68	0.99
67523--67731	104	2.0	103	93	0	355	37	15	14	32	1.89
72153--72294	36	4.0	36	88	0	205	30	21	26	20	1.98
76178--76246	36	1.9	36	82	5	86	37	8	2	50	1.48
77443--77472	15	2.0	15	93	0	51	16	0	10	73	1.09
78130--78176	3	15.7	3	90	0	76	61	0	38	0	0.96
85786--85823	14	2.7	14	84	11	51	21	10	28	39	1.86
88586--88648	2	32.0	2	93	3	110	0	47	0	52	1.00
89642--89688	22	2.1	22	92	0	76	23	14	38	23	1.92
89886--90046	20	7.8	20	86	5	223	21	17	18	42	1.89
90042--90084	21	2.0	22	90	4	70	39	13	25	20	1.90
90413--90586	89	2.0	89	91	0	285	36	14	14	34	1.87
90734--90790	29	2.0	29	82	6	71	42	19	12	26	1.86
92758--92871	60	1.9	60	88	0	174	22	17	13	46	1.83
94994--95038	23	2.0	23	82	8	56	57	2	4	35	1.31
95143--95319	60	3.0	60	80	5	187	32	22	5	40	1.77
95493--95636	60	2.4	59	82	11	168	43	7	19	29	1.79
99617--99650	2	16.5	2	93	6	59	50	0	2	47	1.16
105778--105840	23	2.7	23	95	2	108	41	9	3	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106589--106627	20	2.0	20	84	0	51	56	0	0	43	0.99
106760--106834	24	3.0	23	81	13	69	40	1	2	56	1.22
106778--106835	24	2.4	23	83	11	71	41	0	1	56	1.09
112415--112444	6	5.0	6	95	0	51	36	33	13	16	1.88
114230--114281	16	3.2	17	72	22	58	42	0	21	36	1.53
114564--114693	65	2.0	66	95	1	235	33	11	6	48	1.64
116692--116757	15	4.2	15	73	11	53	1	36	1	60	1.15
119364--119480	36	3.2	36	88	9	173	11	36	3	48	1.55
119389--119480	12	7.4	12	73	20	57	9	36	3	50	1.52
119365--119482	39	3.1	39	91	6	181	11	35	3	50	1.55
119389--119444	18	3.1	18	67	10	51	8	37	3	50	1.51
122274--122321	20	2.3	21	78	7	62	66	8	6	18	1.39
122984--123013	9	3.3	9	95	0	51	56	6	33	3	1.42
123385--123522	60	2.3	59	79	7	143	42	13	9	34	1.76
128980--129013	11	3.1	11	95	0	59	29	0	5	64	1.17
131076--131109	15	2.2	15	89	5	50	61	0	2	35	1.11
131199--131275	29	2.6	29	72	12	75	51	14	9	24	1.70
131353--131429	30	2.6	32	78	12	83	55	2	1	40	1.22
131924--131966	21	2.1	20	82	4	50	46	4	0	48	1.22
132465--132525	29	2.1	30	84	9	81	45	13	21	19	1.84

Tables:   1

The End!